Mercurial > repos > iuc > bakta
comparison bakta.xml @ 1:da5f1924bb2e draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
| author | iuc |
|---|---|
| date | Fri, 16 Sep 2022 13:42:15 +0000 |
| parents | 1a27ad3d0cdf |
| children | debdc1469b41 |
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| 0:1a27ad3d0cdf | 1:da5f1924bb2e |
|---|---|
| 231 <test expect_num_outputs="12"> <!-- TEST_1 database + input --> | 231 <test expect_num_outputs="12"> <!-- TEST_1 database + input --> |
| 232 <section name="input_option" > | 232 <section name="input_option" > |
| 233 <param name="db_select" value="test-db-bakta"/> | 233 <param name="db_select" value="test-db-bakta"/> |
| 234 <param name="input_file" value="NC_002127.1.fna"/> | 234 <param name="input_file" value="NC_002127.1.fna"/> |
| 235 </section> | 235 </section> |
| 236 <output name="logfile" value="TEST_1/TEST_1.log" lines_diff="4"> | 236 <output name="logfile" value="TEST_1/TEST_1.log" lines_diff="10"> |
| 237 <assert_contents> | 237 <assert_contents> |
| 238 <has_text_matching n="1" expression="Genome size: 1,330 bp"/> | 238 <has_text_matching n="1" expression="Genome size: 1,330 bp"/> |
| 239 <has_n_lines n="90" delta="1"/> | 239 <has_n_lines n="94" delta="1"/> |
| 240 </assert_contents> | 240 </assert_contents> |
| 241 </output> | 241 </output> |
| 242 <output name="annotation_tsv" value="TEST_1/TEST_1.tsv" lines_diff="1"/> | 242 <output name="annotation_tsv" value="TEST_1/TEST_1.tsv" lines_diff="1"/> |
| 243 <output name="annotation_gff3" value="TEST_1/TEST_1.gff3" lines_diff="2"> | 243 <output name="annotation_gff3" value="TEST_1/TEST_1.gff3" lines_diff="2"> |
| 244 <assert_contents> | 244 <assert_contents> |