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comparison test-data/TEST_2/TEST_2.embl @ 1:da5f1924bb2e draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
author iuc
date Fri, 16 Sep 2022 13:42:15 +0000
parents 1a27ad3d0cdf
children
comparison
equal deleted inserted replaced
0:1a27ad3d0cdf 1:da5f1924bb2e
6 XX 6 XX
7 OS Escherichia coli o157:h7 Sakai 7 OS Escherichia coli o157:h7 Sakai
8 OC . 8 OC .
9 XX 9 XX
10 CC Annotated with Bakta 10 CC Annotated with Bakta
11 CC Software: v1.4.2 11 CC Software: v1.5.0
12 CC Database: v3.0 12 CC Database: v4.0
13 CC DOI: 10.1099/mgen.0.000685 13 CC DOI: 10.1099/mgen.0.000685
14 CC URL: github.com/oschwengers/bakta 14 CC URL: github.com/oschwengers/bakta
15 CC 15 CC
16 CC ##Genome Annotation Summary:## 16 CC ##Genome Annotation Summary:##
17 CC Annotation Date :: 08/22/2022, 13:07:08 17 CC Annotation Date :: 09/16/2022, 07:32:10
18 CC Annotation Pipeline :: Bakta 18 CC Annotation Pipeline :: Bakta
19 CC Annotation Software version :: v1.4.2 19 CC Annotation Software version :: v1.5.0
20 CC Annotation Database version :: v3.0 20 CC Annotation Database version :: v4.0
21 CC CDSs :: 2 21 CC CDSs :: 2
22 CC tRNAs :: 0 22 CC tRNAs :: 0
23 CC tmRNAs :: 0 23 CC tmRNAs :: 0
24 CC rRNAs :: 0 24 CC rRNAs :: 0
25 CC ncRNAs :: 0 25 CC ncRNAs :: 0
26 CC regulatory ncRNAs :: 0 26 CC regulatory ncRNAs :: 0
27 CC CRISPR Arrays :: 0 27 CC CRISPR Arrays :: 0
28 CC oriCs/oriVs :: 0 28 CC oriCs/oriVs :: 0
29 CC oriTs :: 0 29 CC oriTs :: 0
30 CC gaps :: 0 30 CC gaps :: 0
31 CC pseudogenes :: 0
31 XX 32 XX
32 FH Key Location/Qualifiers 33 FH Key Location/Qualifiers
33 FH 34 FH
34 FT source 1..1330 35 FT source 1..1330
35 FT /mol_type="genomic DNA" 36 FT /mol_type="genomic DNA"
39 FT gene 413..736 40 FT gene 413..736
40 FT /locus_tag="IHHALP_00005" 41 FT /locus_tag="IHHALP_00005"
41 FT CDS 413..736 42 FT CDS 413..736
42 FT /product="hypothetical protein" 43 FT /product="hypothetical protein"
43 FT /locus_tag="IHHALP_00005" 44 FT /locus_tag="IHHALP_00005"
45 FT /protein_id="gnl|Bakta|IHHALP_00005"
44 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA 46 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
45 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL 47 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
46 FT MAD" 48 FT MAD"
47 FT /codon_start=1 49 FT /codon_start=1
48 FT /transl_table=11 50 FT /transl_table=11
49 FT /protein_id="gnl|Bakta|IHHALP_00005"
50 FT /inference="ab initio prediction:Prodigal:2.6" 51 FT /inference="ab initio prediction:Prodigal:2.6"
51 FT gene complement(join(971..1330,1..141)) 52 FT gene complement(join(971..1330,1..141))
52 FT /locus_tag="IHHALP_00010" 53 FT /locus_tag="IHHALP_00010"
53 FT CDS complement(join(971..1330,1..141)) 54 FT CDS complement(join(971..1330,1..141))
54 FT /product="hypothetical protein" 55 FT /product="hypothetical protein"
55 FT /locus_tag="IHHALP_00010" 56 FT /locus_tag="IHHALP_00010"
57 FT /protein_id="gnl|Bakta|IHHALP_00010"
56 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA 58 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
57 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR 59 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
58 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG 60 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
59 FT IPI" 61 FT IPI"
60 FT /codon_start=1 62 FT /codon_start=1
61 FT /transl_table=11 63 FT /transl_table=11
62 FT /protein_id="gnl|Bakta|IHHALP_00010"
63 FT /inference="ab initio prediction:Prodigal:2.6" 64 FT /inference="ab initio prediction:Prodigal:2.6"
64 XX 65 XX
65 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; 66 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
66 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 67 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
67 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 68 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120