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comparison test-data/TEST_2/TEST_2.gbff @ 1:da5f1924bb2e draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
author iuc
date Fri, 16 Sep 2022 13:42:15 +0000
parents 1a27ad3d0cdf
children
comparison
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0:1a27ad3d0cdf 1:da5f1924bb2e
1 LOCUS NC_002127.1 1330 bp DNA circular BCT 22-AUG-2022 1 LOCUS NC_002127.1 1330 bp DNA circular BCT 16-SEP-2022
2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence. 2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
3 ACCESSION NC_002127 3 ACCESSION NC_002127
4 VERSION NC_002127.1 4 VERSION NC_002127.1
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE Escherichia coli o157:h7 Sakai 6 SOURCE Escherichia coli o157:h7 Sakai
7 ORGANISM Escherichia coli o157:h7 Sakai 7 ORGANISM Escherichia coli o157:h7 Sakai
8 . 8 .
9 COMMENT Annotated with Bakta 9 COMMENT Annotated with Bakta
10 Software: v1.4.2 10 Software: v1.5.0
11 Database: v3.0 11 Database: v4.0
12 DOI: 10.1099/mgen.0.000685 12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta 13 URL: github.com/oschwengers/bakta
14 14
15 ##Genome Annotation Summary:## 15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/22/2022, 13:07:08 16 Annotation Date :: 09/16/2022, 07:32:10
17 Annotation Pipeline :: Bakta 17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2 18 Annotation Software version :: v1.5.0
19 Annotation Database version :: v3.0 19 Annotation Database version :: v4.0
20 CDSs :: 2 20 CDSs :: 2
21 tRNAs :: 0 21 tRNAs :: 0
22 tmRNAs :: 0 22 tmRNAs :: 0
23 rRNAs :: 0 23 rRNAs :: 0
24 ncRNAs :: 0 24 ncRNAs :: 0
25 regulatory ncRNAs :: 0 25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0 26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0 27 oriCs/oriVs :: 0
28 oriTs :: 0 28 oriTs :: 0
29 gaps :: 0 29 gaps :: 0
30 pseudogenes :: 0
30 FEATURES Location/Qualifiers 31 FEATURES Location/Qualifiers
31 source 1..1330 32 source 1..1330
32 /mol_type="genomic DNA" 33 /mol_type="genomic DNA"
33 /organism="Escherichia coli o157:h7 Sakai" 34 /organism="Escherichia coli o157:h7 Sakai"
34 /strain="Sakai" 35 /strain="Sakai"
36 gene 413..736 37 gene 413..736
37 /locus_tag="IHHALP_00005" 38 /locus_tag="IHHALP_00005"
38 CDS 413..736 39 CDS 413..736
39 /product="hypothetical protein" 40 /product="hypothetical protein"
40 /locus_tag="IHHALP_00005" 41 /locus_tag="IHHALP_00005"
42 /protein_id="gnl|Bakta|IHHALP_00005"
41 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA 43 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
42 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL 44 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
43 MAD" 45 MAD"
44 /codon_start=1 46 /codon_start=1
45 /transl_table=11 47 /transl_table=11
46 /protein_id="gnl|Bakta|IHHALP_00005"
47 /inference="ab initio prediction:Prodigal:2.6" 48 /inference="ab initio prediction:Prodigal:2.6"
48 gene complement(join(971..1330,1..141)) 49 gene complement(join(971..1330,1..141))
49 /locus_tag="IHHALP_00010" 50 /locus_tag="IHHALP_00010"
50 CDS complement(join(971..1330,1..141)) 51 CDS complement(join(971..1330,1..141))
51 /product="hypothetical protein" 52 /product="hypothetical protein"
52 /locus_tag="IHHALP_00010" 53 /locus_tag="IHHALP_00010"
54 /protein_id="gnl|Bakta|IHHALP_00010"
53 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA 55 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
54 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR 56 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
55 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG 57 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
56 IPI" 58 IPI"
57 /codon_start=1 59 /codon_start=1
58 /transl_table=11 60 /transl_table=11
59 /protein_id="gnl|Bakta|IHHALP_00010"
60 /inference="ab initio prediction:Prodigal:2.6" 61 /inference="ab initio prediction:Prodigal:2.6"
61 ORIGIN 62 ORIGIN
62 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 63 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
63 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 64 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
64 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 65 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg