diff test-data/tmp/TEST_1/TEST_1.embl @ 0:1a27ad3d0cdf draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tmp/TEST_1/TEST_1.embl	Thu Sep 01 17:28:43 2022 +0000
@@ -0,0 +1,87 @@
+ID   contig_1; ; circular; DNA; ; PRO; 1330 BP.
+XX
+AC   contig_1;
+XX
+DE   plasmid unnamed1, complete sequence
+XX
+OS   .
+OC   .
+XX
+CC   Annotated with Bakta
+CC   Software: v1.4.2
+CC   Database: v3.0
+CC   DOI: 10.1099/mgen.0.000685
+CC   URL: github.com/oschwengers/bakta
+CC   
+CC   ##Genome Annotation Summary:##
+CC   Annotation Date                :: 08/22/2022, 12:57:48
+CC   Annotation Pipeline            :: Bakta
+CC   Annotation Software version    ::  v1.4.2
+CC   Annotation Database version    ::  v3.0
+CC   CDSs                           ::     2
+CC   tRNAs                          ::     0
+CC   tmRNAs                         ::     0
+CC   rRNAs                          ::     0
+CC   ncRNAs                         ::     0
+CC   regulatory ncRNAs              ::     0
+CC   CRISPR Arrays                  ::     0
+CC   oriCs/oriVs                    ::     0
+CC   oriTs                          ::     0
+CC   gaps                           ::     0
+XX
+FH   Key             Location/Qualifiers
+FH
+FT   source          1..1330
+FT                   /mol_type="genomic DNA"
+FT                   /plasmid="unnamed1"
+FT   gene            413..736
+FT                   /locus_tag="IHHALP_00005"
+FT   CDS             413..736
+FT                   /product="hypothetical protein"
+FT                   /locus_tag="IHHALP_00005"
+FT                   /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
+FT                   AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
+FT                   MAD"
+FT                   /codon_start=1
+FT                   /transl_table=11
+FT                   /protein_id="gnl|Bakta|IHHALP_00005"
+FT                   /inference="ab initio prediction:Prodigal:2.6"
+FT   gene            complement(join(971..1330,1..141))
+FT                   /locus_tag="IHHALP_00010"
+FT   CDS             complement(join(971..1330,1..141))
+FT                   /product="hypothetical protein"
+FT                   /locus_tag="IHHALP_00010"
+FT                   /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
+FT                   EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
+FT                   YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
+FT                   IPI"
+FT                   /codon_start=1
+FT                   /transl_table=11
+FT                   /protein_id="gnl|Bakta|IHHALP_00010"
+FT                   /inference="ab initio prediction:Prodigal:2.6"
+XX
+SQ   Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
+     ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc        60
+     gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc       120
+     agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg       180
+     tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt       240
+     tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt       300
+     gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac       360
+     cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa       420
+     acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga       480
+     agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt       540
+     acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga       600
+     agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga       660
+     cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag       720
+     gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt       780
+     aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga       840
+     tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc       900
+     agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc       960
+     tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa      1020
+     ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat      1080
+     cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat      1140
+     taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa      1200
+     aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc      1260
+     tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg      1320
+     cttctatttg                                                             1330
+//