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view test-data/TEST_6/TEST_6.json @ 5:728dacaf08a9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 5ab93133efa5de410e992919c4e841807fb43b55
author iuc
date Sat, 16 Sep 2023 09:01:39 +0000
parents 3f0aa1b3e816
children 92eee5f31117
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{
    "genome": {
        "genus": null,
        "species": null,
        "strain": null,
        "complete": true,
        "gram": "?",
        "translation_table": 11
    },
    "stats": {
        "no_sequences": 1,
        "size": 1330,
        "gc": 0.4518796992481203,
        "n_ratio": 0.0,
        "n50": 1330,
        "coding_ratio": 0.6203007518796992
    },
    "features": [
        {
            "type": "cds",
            "contig": "contig_1",
            "start": 413,
            "stop": 736,
            "strand": "+",
            "gene": null,
            "product": "hypothetical protein",
            "start_type": "ATG",
            "rbs_motif": "GGAG/GAGG",
            "db_xrefs": [],
            "frame": 2,
            "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
            "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
            "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
            "hypothetical": true,
            "genes": [],
            "seq_stats": {
                "molecular_weight": 12072.90819999999,
                "isoelectric_point": 10.367886161804197
            },
            "id": "IHHALPPJCH_1",
            "locus": "IHHALP_00005"
        },
        {
            "type": "cds",
            "contig": "contig_1",
            "start": 971,
            "stop": 141,
            "strand": "-",
            "gene": null,
            "product": "hypothetical protein",
            "start_type": "ATG",
            "rbs_motif": "AGGA/GGAG/GAGG",
            "db_xrefs": [],
            "frame": 1,
            "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
            "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
            "edge": true,
            "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
            "hypothetical": true,
            "genes": [],
            "seq_stats": {
                "molecular_weight": 18866.325799999995,
                "isoelectric_point": 7.696590614318848
            },
            "id": "IHHALPPJCH_2",
            "locus": "IHHALP_00010"
        }
    ],
    "sequences": [
        {
            "id": "contig_1",
            "description": "[gcode=11] [completeness=complete] [topology=circular] [plasmid-name=unnamed1]",
            "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
            "length": 1330,
            "complete": true,
            "type": "plasmid",
            "topology": "circular",
            "simple_id": "contig_1",
            "orig_id": "NC_002127.1",
            "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
            "name": "unnamed1"
        }
    ],
    "run": {
        "start": "2023-06-19 09:31:32",
        "end": "2023-06-19 09:31:33"
    },
    "version": {
        "bakta": "1.8.1",
        "db": {
            "version": "5.0",
            "type": "full"
        }
    }
}