Mercurial > repos > iuc > bakta
view test-data/TEST_2/TEST_2.log @ 3:865ece5ca178 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 9f516ce5c84b251b9041cd79129e5b5e1979a738
| author | iuc |
|---|---|
| date | Fri, 10 Feb 2023 14:20:09 +0000 |
| parents | da5f1924bb2e |
| children |
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parse genome sequences... imported: 1 filtered & revised: 1 plasmids: 1 start annotation... skip tRNA prediction... skip tmRNA prediction... predict rRNAs... found: 0 predict ncRNAs... found: 0 predict ncRNA regions... found: 0 predict CRISPR arrays... found: 0 predict & annotate CDSs... predicted: 2 discarded spurious: 0 revised translational exceptions: 0 detected IPSs: 0 found PSCs: 0 found PSCCs: 0 lookup annotations... conduct expert systems... amrfinder: 0 protein sequences: 0 combine annotations and mark hypotheticals... detect pseudogenes... pseudogene candidates: 0 found pseudogenes: 0 analyze hypothetical proteins: 2 detected Pfam hits: 0 calculated proteins statistics revise special cases... extract sORF... potential: 22 discarded due to overlaps: 2 discarded spurious: 0 detected IPSs: 0 found PSCs: 0 lookup annotations... filter and combine annotations... filtered sORFs: 0 detect gaps... found: 0 detect oriCs/oriVs... found: 0 detect oriTs... found: 0 apply feature overlap filters... select features and create locus tags... selected: 2 genome statistics: Genome size: 1,330 bp Contigs/replicons: 1 GC: 45.2 % N50: 1,330 N ratio: 0.0 % coding density: 62.0 % annotation summary: tRNAs: 0 tmRNAs: 0 rRNAs: 0 ncRNAs: 0 ncRNA regions: 0 CRISPR arrays: 0 CDSs: 2 hypotheticals: 2 pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working human readable TSV... GFF3... INSDC GenBank & EMBL... genome sequences... feature nucleotide sequences... translated CDS sequences... circular genome plot... hypothetical TSV... translated hypothetical CDS sequences... machine readable JSON... genome and annotation summary... If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 Annotation successfully finished in 0:00 [mm:ss].