Mercurial > repos > iuc > bakta
changeset 1:da5f1924bb2e draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
| author | iuc |
|---|---|
| date | Fri, 16 Sep 2022 13:42:15 +0000 |
| parents | 1a27ad3d0cdf |
| children | debdc1469b41 |
| files | bakta.xml macro.xml test-data/TEST_1/TEST_1.embl test-data/TEST_1/TEST_1.gbff test-data/TEST_1/TEST_1.gff3 test-data/TEST_1/TEST_1.hypotheticals.tsv test-data/TEST_1/TEST_1.json test-data/TEST_1/TEST_1.log test-data/TEST_1/TEST_1.tsv test-data/TEST_1/TEST_1.txt test-data/TEST_2/TEST_2.embl test-data/TEST_2/TEST_2.gbff test-data/TEST_2/TEST_2.gff3 test-data/TEST_2/TEST_2.hypotheticals.tsv test-data/TEST_2/TEST_2.json test-data/TEST_2/TEST_2.log test-data/TEST_2/TEST_2.tsv test-data/TEST_2/TEST_2.txt test-data/TEST_3/TEST_3.embl test-data/TEST_3/TEST_3.gbff test-data/TEST_3/TEST_3.gff3 test-data/TEST_3/TEST_3.json test-data/TEST_3/TEST_3.log test-data/TEST_3/TEST_3.tsv test-data/TEST_4/TEST_4.embl test-data/TEST_4/TEST_4.gbff test-data/TEST_4/TEST_4.gff3 test-data/TEST_4/TEST_4.hypotheticals.tsv test-data/TEST_4/TEST_4.json test-data/TEST_4/TEST_4.log test-data/TEST_4/TEST_4.tsv test-data/TEST_4/TEST_4.txt test-data/TEST_5/TEST_5.log test-data/TEST_5/TEST_5.txt test-data/test-db/bakta.db test-data/test-db/version.json test-data/tmp/NC_002127.1.fna test-data/tmp/TEST_1/TEST_1.embl test-data/tmp/TEST_1/TEST_1.faa test-data/tmp/TEST_1/TEST_1.ffn test-data/tmp/TEST_1/TEST_1.fna test-data/tmp/TEST_1/TEST_1.gbff test-data/tmp/TEST_1/TEST_1.gff3 test-data/tmp/TEST_1/TEST_1.hypotheticals.faa test-data/tmp/TEST_1/TEST_1.hypotheticals.tsv test-data/tmp/TEST_1/TEST_1.json test-data/tmp/TEST_1/TEST_1.log test-data/tmp/TEST_1/TEST_1.tsv test-data/tmp/TEST_1/TEST_1.txt test-data/tmp/TEST_2/TEST_2.embl test-data/tmp/TEST_2/TEST_2.faa test-data/tmp/TEST_2/TEST_2.ffn test-data/tmp/TEST_2/TEST_2.fna test-data/tmp/TEST_2/TEST_2.gbff test-data/tmp/TEST_2/TEST_2.gff3 test-data/tmp/TEST_2/TEST_2.hypotheticals.faa test-data/tmp/TEST_2/TEST_2.hypotheticals.tsv test-data/tmp/TEST_2/TEST_2.json test-data/tmp/TEST_2/TEST_2.log test-data/tmp/TEST_2/TEST_2.tsv test-data/tmp/TEST_2/TEST_2.txt test-data/tmp/TEST_3/TEST_3.embl test-data/tmp/TEST_3/TEST_3.faa test-data/tmp/TEST_3/TEST_3.ffn test-data/tmp/TEST_3/TEST_3.fna test-data/tmp/TEST_3/TEST_3.gbff test-data/tmp/TEST_3/TEST_3.gff3 test-data/tmp/TEST_3/TEST_3.json test-data/tmp/TEST_3/TEST_3.log test-data/tmp/TEST_3/TEST_3.tsv test-data/tmp/TEST_3/TEST_3.txt test-data/tmp/TEST_4/TEST_4.embl test-data/tmp/TEST_4/TEST_4.faa test-data/tmp/TEST_4/TEST_4.ffn test-data/tmp/TEST_4/TEST_4.fna test-data/tmp/TEST_4/TEST_4.gbff test-data/tmp/TEST_4/TEST_4.gff3 test-data/tmp/TEST_4/TEST_4.hypotheticals.faa test-data/tmp/TEST_4/TEST_4.hypotheticals.tsv test-data/tmp/TEST_4/TEST_4.json test-data/tmp/TEST_4/TEST_4.log test-data/tmp/TEST_4/TEST_4.tsv test-data/tmp/TEST_4/TEST_4.txt test-data/tmp/TEST_5/TEST_5.log test-data/tmp/TEST_5/TEST_5.txt test-data/tmp/prodigal.tf test-data/tmp/replicons.tsv test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3f test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3i test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3m test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3p test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-mutation.tab test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-suppress test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-susceptible.tab test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.pdb test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.phr test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.pin test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.psq test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.ptf test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt.pto test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ndb test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nhr test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nin test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.not test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nsq test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ntf test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nto test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/database_format_version.txt test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/fam.tab test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/taxgroup.tab test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/version.txt test-data/tmp/test-db/antifam.h3f test-data/tmp/test-db/antifam.h3i test-data/tmp/test-db/antifam.h3m test-data/tmp/test-db/antifam.h3p test-data/tmp/test-db/bakta.db test-data/tmp/test-db/expert-protein-sequences.dmnd test-data/tmp/test-db/ncRNA-genes.i1f test-data/tmp/test-db/ncRNA-genes.i1i test-data/tmp/test-db/ncRNA-genes.i1m test-data/tmp/test-db/ncRNA-genes.i1p test-data/tmp/test-db/ncRNA-regions.i1f test-data/tmp/test-db/ncRNA-regions.i1i test-data/tmp/test-db/ncRNA-regions.i1m test-data/tmp/test-db/ncRNA-regions.i1p test-data/tmp/test-db/oric.fna test-data/tmp/test-db/orit.fna test-data/tmp/test-db/pfam.h3f test-data/tmp/test-db/pfam.h3i test-data/tmp/test-db/pfam.h3m test-data/tmp/test-db/pfam.h3p test-data/tmp/test-db/psc.dmnd test-data/tmp/test-db/rRNA.i1f test-data/tmp/test-db/rRNA.i1i test-data/tmp/test-db/rRNA.i1m test-data/tmp/test-db/rRNA.i1p test-data/tmp/test-db/rfam-go.tsv test-data/tmp/test-db/sorf.dmnd test-data/tmp/test-db/version.json test-data/tmp/test_database.loc test-data/tmp/user-proteins.faa |
| diffstat | 139 files changed, 141 insertions(+), 3716 deletions(-) [+] |
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--- a/bakta.xml Thu Sep 01 17:28:43 2022 +0000 +++ b/bakta.xml Fri Sep 16 13:42:15 2022 +0000 @@ -233,10 +233,10 @@ <param name="db_select" value="test-db-bakta"/> <param name="input_file" value="NC_002127.1.fna"/> </section> - <output name="logfile" value="TEST_1/TEST_1.log" lines_diff="4"> + <output name="logfile" value="TEST_1/TEST_1.log" lines_diff="10"> <assert_contents> <has_text_matching n="1" expression="Genome size: 1,330 bp"/> - <has_n_lines n="90" delta="1"/> + <has_n_lines n="94" delta="1"/> </assert_contents> </output> <output name="annotation_tsv" value="TEST_1/TEST_1.tsv" lines_diff="1"/>
--- a/macro.xml Thu Sep 01 17:28:43 2022 +0000 +++ b/macro.xml Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">1.4.2</token> + <token name="@TOOL_VERSION@">1.5.0</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.05</token> <xml name="version_command">
--- a/test-data/TEST_1/TEST_1.embl Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.embl Fri Sep 16 13:42:15 2022 +0000 @@ -8,16 +8,16 @@ OC . XX CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 +CC Software: v1.5.0 +CC Database: v4.0 CC DOI: 10.1099/mgen.0.000685 CC URL: github.com/oschwengers/bakta CC CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 13:06:54 +CC Annotation Date :: 09/16/2022, 07:31:59 CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 +CC Annotation Software version :: v1.5.0 +CC Annotation Database version :: v4.0 CC CDSs :: 2 CC tRNAs :: 0 CC tmRNAs :: 0 @@ -28,6 +28,7 @@ CC oriCs/oriVs :: 0 CC oriTs :: 0 CC gaps :: 0 +CC pseudogenes :: 0 XX FH Key Location/Qualifiers FH @@ -39,25 +40,25 @@ FT CDS 413..736 FT /product="hypothetical protein" FT /locus_tag="IHHALP_00005" +FT /protein_id="gnl|Bakta|IHHALP_00005" FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL FT MAD" FT /codon_start=1 FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00005" FT /inference="ab initio prediction:Prodigal:2.6" FT gene complement(join(971..1330,1..141)) FT /locus_tag="IHHALP_00010" FT CDS complement(join(971..1330,1..141)) FT /product="hypothetical protein" FT /locus_tag="IHHALP_00010" +FT /protein_id="gnl|Bakta|IHHALP_00010" FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG FT IPI" FT /codon_start=1 FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00010" FT /inference="ab initio prediction:Prodigal:2.6" XX SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
--- a/test-data/TEST_1/TEST_1.gbff Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.gbff Fri Sep 16 13:42:15 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS contig_1 1330 bp DNA circular BCT 22-AUG-2022 +LOCUS contig_1 1330 bp DNA circular BCT 16-SEP-2022 DEFINITION plasmid unnamed1, complete sequence. ACCESSION contig_1 VERSION contig_1 @@ -7,16 +7,16 @@ ORGANISM . . COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 + Software: v1.5.0 + Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 13:06:54 + Annotation Date :: 09/16/2022, 07:31:59 Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 + Annotation Software version :: v1.5.0 + Annotation Database version :: v4.0 CDSs :: 2 tRNAs :: 0 tmRNAs :: 0 @@ -27,6 +27,7 @@ oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 + pseudogenes :: 0 FEATURES Location/Qualifiers source 1..1330 /mol_type="genomic DNA" @@ -36,25 +37,25 @@ CDS 413..736 /product="hypothetical protein" /locus_tag="IHHALP_00005" + /protein_id="gnl|Bakta|IHHALP_00005" /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL MAD" /codon_start=1 /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00005" /inference="ab initio prediction:Prodigal:2.6" gene complement(join(971..1330,1..141)) /locus_tag="IHHALP_00010" CDS complement(join(971..1330,1..141)) /product="hypothetical protein" /locus_tag="IHHALP_00010" + /protein_id="gnl|Bakta|IHHALP_00010" /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG IPI" /codon_start=1 /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00010" /inference="ab initio prediction:Prodigal:2.6" ORIGIN 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
--- a/test-data/TEST_1/TEST_1.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.gff3 Fri Sep 16 13:42:15 2022 +0000 @@ -1,8 +1,8 @@ ##gff-version 3 ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo # Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 +# Software: v1.5.0 +# Database: v4.0 # DOI: 10.1099/mgen.0.000685 # URL: github.com/oschwengers/bakta ##sequence-region contig_1 1 1330
--- a/test-data/TEST_1/TEST_1.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.hypotheticals.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta v1.5.0, https://github.com/oschwengers/bakta +#Database v4.0, https://doi.org/10.5281/zenodo.4247252 #Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs contig_1 413 736 + IHHALP_00005 12.1 10.4 contig_1 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/TEST_1/TEST_1.json Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.json Fri Sep 16 13:42:15 2022 +0000 @@ -80,11 +80,11 @@ } ], "run": { - "start": "2022-08-22 13:06:53", - "end": "2022-08-22 13:06:54" + "start": "2022-09-16 07:31:58", + "end": "2022-09-16 07:31:59" }, "version": { - "bakta": "1.4.2", - "db": "3.0" + "bakta": "1.5.0", + "db": "4.0" } } \ No newline at end of file
--- a/test-data/TEST_1/TEST_1.log Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.log Fri Sep 16 13:42:15 2022 +0000 @@ -28,7 +28,10 @@ amrfinder: 0 protein sequences: 0 combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 + detect pseudogenes... + pseudogene candidates: 0 + found pseudogenes: 0 +analyze hypothetical proteins: 2 detected Pfam hits: 0 calculated proteins statistics revise special cases... @@ -68,13 +71,14 @@ CRISPR arrays: 0 CDSs: 2 hypotheticals: 2 + pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 -export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/2/working +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/2/working human readable TSV... GFF3... INSDC GenBank & EMBL...
--- a/test-data/TEST_1/TEST_1.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta (v1.5.0): https://github.com/oschwengers/bakta +#Database (v4.0): https://doi.org/10.5281/zenodo.4247252 #Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs contig_1 cds 413 736 + IHHALP_00005 hypothetical protein contig_1 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/TEST_1/TEST_1.txt Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_1/TEST_1.txt Fri Sep 16 13:42:15 2022 +0000 @@ -14,6 +14,7 @@ ncRNA regions: 0 CRISPR arrays: 0 CDSs: 2 +pseudogenes: 0 hypotheticals: 2 signal peptides: 0 sORFs: 0 @@ -23,7 +24,7 @@ oriTs: 0 Bakta: -Software: v1.4.2 -Database: v3.0 +Software: v1.5.0 +Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta
--- a/test-data/TEST_2/TEST_2.embl Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.embl Fri Sep 16 13:42:15 2022 +0000 @@ -8,16 +8,16 @@ OC . XX CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 +CC Software: v1.5.0 +CC Database: v4.0 CC DOI: 10.1099/mgen.0.000685 CC URL: github.com/oschwengers/bakta CC CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 13:07:08 +CC Annotation Date :: 09/16/2022, 07:32:10 CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 +CC Annotation Software version :: v1.5.0 +CC Annotation Database version :: v4.0 CC CDSs :: 2 CC tRNAs :: 0 CC tmRNAs :: 0 @@ -28,6 +28,7 @@ CC oriCs/oriVs :: 0 CC oriTs :: 0 CC gaps :: 0 +CC pseudogenes :: 0 XX FH Key Location/Qualifiers FH @@ -41,25 +42,25 @@ FT CDS 413..736 FT /product="hypothetical protein" FT /locus_tag="IHHALP_00005" +FT /protein_id="gnl|Bakta|IHHALP_00005" FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL FT MAD" FT /codon_start=1 FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00005" FT /inference="ab initio prediction:Prodigal:2.6" FT gene complement(join(971..1330,1..141)) FT /locus_tag="IHHALP_00010" FT CDS complement(join(971..1330,1..141)) FT /product="hypothetical protein" FT /locus_tag="IHHALP_00010" +FT /protein_id="gnl|Bakta|IHHALP_00010" FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG FT IPI" FT /codon_start=1 FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00010" FT /inference="ab initio prediction:Prodigal:2.6" XX SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
--- a/test-data/TEST_2/TEST_2.gbff Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.gbff Fri Sep 16 13:42:15 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS NC_002127.1 1330 bp DNA circular BCT 22-AUG-2022 +LOCUS NC_002127.1 1330 bp DNA circular BCT 16-SEP-2022 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence. ACCESSION NC_002127 VERSION NC_002127.1 @@ -7,16 +7,16 @@ ORGANISM Escherichia coli o157:h7 Sakai . COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 + Software: v1.5.0 + Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 13:07:08 + Annotation Date :: 09/16/2022, 07:32:10 Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 + Annotation Software version :: v1.5.0 + Annotation Database version :: v4.0 CDSs :: 2 tRNAs :: 0 tmRNAs :: 0 @@ -27,6 +27,7 @@ oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 + pseudogenes :: 0 FEATURES Location/Qualifiers source 1..1330 /mol_type="genomic DNA" @@ -38,25 +39,25 @@ CDS 413..736 /product="hypothetical protein" /locus_tag="IHHALP_00005" + /protein_id="gnl|Bakta|IHHALP_00005" /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL MAD" /codon_start=1 /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00005" /inference="ab initio prediction:Prodigal:2.6" gene complement(join(971..1330,1..141)) /locus_tag="IHHALP_00010" CDS complement(join(971..1330,1..141)) /product="hypothetical protein" /locus_tag="IHHALP_00010" + /protein_id="gnl|Bakta|IHHALP_00010" /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG IPI" /codon_start=1 /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00010" /inference="ab initio prediction:Prodigal:2.6" ORIGIN 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
--- a/test-data/TEST_2/TEST_2.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.gff3 Fri Sep 16 13:42:15 2022 +0000 @@ -2,8 +2,8 @@ ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo # organism Escherichia coli o157:h7 Sakai # Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 +# Software: v1.5.0 +# Database: v4.0 # DOI: 10.1099/mgen.0.000685 # URL: github.com/oschwengers/bakta ##sequence-region NC_002127.1 1 1330
--- a/test-data/TEST_2/TEST_2.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.hypotheticals.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta v1.5.0, https://github.com/oschwengers/bakta +#Database v4.0, https://doi.org/10.5281/zenodo.4247252 #Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs NC_002127.1 413 736 + IHHALP_00005 12.1 10.4 NC_002127.1 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/TEST_2/TEST_2.json Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.json Fri Sep 16 13:42:15 2022 +0000 @@ -79,11 +79,11 @@ } ], "run": { - "start": "2022-08-22 13:07:07", - "end": "2022-08-22 13:07:08" + "start": "2022-09-16 07:32:09", + "end": "2022-09-16 07:32:10" }, "version": { - "bakta": "1.4.2", - "db": "3.0" + "bakta": "1.5.0", + "db": "4.0" } } \ No newline at end of file
--- a/test-data/TEST_2/TEST_2.log Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.log Fri Sep 16 13:42:15 2022 +0000 @@ -26,7 +26,10 @@ amrfinder: 0 protein sequences: 0 combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 + detect pseudogenes... + pseudogene candidates: 0 + found pseudogenes: 0 +analyze hypothetical proteins: 2 detected Pfam hits: 0 calculated proteins statistics revise special cases... @@ -66,13 +69,14 @@ CRISPR arrays: 0 CDSs: 2 hypotheticals: 2 + pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 -export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/4/working +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working human readable TSV... GFF3... INSDC GenBank & EMBL...
--- a/test-data/TEST_2/TEST_2.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta (v1.5.0): https://github.com/oschwengers/bakta +#Database (v4.0): https://doi.org/10.5281/zenodo.4247252 #Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs NC_002127.1 cds 413 736 + IHHALP_00005 hypothetical protein NC_002127.1 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/TEST_2/TEST_2.txt Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_2/TEST_2.txt Fri Sep 16 13:42:15 2022 +0000 @@ -14,6 +14,7 @@ ncRNA regions: 0 CRISPR arrays: 0 CDSs: 2 +pseudogenes: 0 hypotheticals: 2 signal peptides: 0 sORFs: 0 @@ -23,7 +24,7 @@ oriTs: 0 Bakta: -Software: v1.4.2 -Database: v3.0 +Software: v1.5.0 +Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta
--- a/test-data/TEST_3/TEST_3.embl Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.embl Fri Sep 16 13:42:15 2022 +0000 @@ -8,16 +8,16 @@ OC . XX CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 +CC Software: v1.5.0 +CC Database: v4.0 CC DOI: 10.1099/mgen.0.000685 CC URL: github.com/oschwengers/bakta CC CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 13:07:22 +CC Annotation Date :: 09/16/2022, 07:32:21 CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 +CC Annotation Software version :: v1.5.0 +CC Annotation Database version :: v4.0 CC CDSs :: 0 CC tRNAs :: 0 CC tmRNAs :: 0 @@ -28,6 +28,7 @@ CC oriCs/oriVs :: 0 CC oriTs :: 0 CC gaps :: 0 +CC pseudogenes :: 0 XX FH Key Location/Qualifiers FH
--- a/test-data/TEST_3/TEST_3.gbff Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.gbff Fri Sep 16 13:42:15 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS contig_1 1330 bp DNA circular BCT 22-AUG-2022 +LOCUS contig_1 1330 bp DNA circular BCT 16-SEP-2022 DEFINITION plasmid unnamed1, complete sequence. ACCESSION contig_1 VERSION contig_1 @@ -7,16 +7,16 @@ ORGANISM . . COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 + Software: v1.5.0 + Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 13:07:22 + Annotation Date :: 09/16/2022, 07:32:21 Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 + Annotation Software version :: v1.5.0 + Annotation Database version :: v4.0 CDSs :: 0 tRNAs :: 0 tmRNAs :: 0 @@ -27,6 +27,7 @@ oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 + pseudogenes :: 0 FEATURES Location/Qualifiers source 1..1330 /mol_type="genomic DNA"
--- a/test-data/TEST_3/TEST_3.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.gff3 Fri Sep 16 13:42:15 2022 +0000 @@ -1,8 +1,8 @@ ##gff-version 3 ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo # Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 +# Software: v1.5.0 +# Database: v4.0 # DOI: 10.1099/mgen.0.000685 # URL: github.com/oschwengers/bakta ##sequence-region contig_1 1 1330
--- a/test-data/TEST_3/TEST_3.json Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.json Fri Sep 16 13:42:15 2022 +0000 @@ -32,11 +32,11 @@ } ], "run": { - "start": "2022-08-22 13:07:21", - "end": "2022-08-22 13:07:22" + "start": "2022-09-16 07:32:20", + "end": "2022-09-16 07:32:21" }, "version": { - "bakta": "1.4.2", - "db": "3.0" + "bakta": "1.5.0", + "db": "4.0" } } \ No newline at end of file
--- a/test-data/TEST_3/TEST_3.log Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.log Fri Sep 16 13:42:15 2022 +0000 @@ -35,13 +35,14 @@ CRISPR arrays: 0 CDSs: 0 hypotheticals: 0 + pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 -export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/6/working +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/6/working human readable TSV... GFF3... INSDC GenBank & EMBL...
--- a/test-data/TEST_3/TEST_3.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_3/TEST_3.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,3 +1,3 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta (v1.5.0): https://github.com/oschwengers/bakta +#Database (v4.0): https://doi.org/10.5281/zenodo.4247252 #Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs
--- a/test-data/TEST_4/TEST_4.embl Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.embl Fri Sep 16 13:42:15 2022 +0000 @@ -8,16 +8,16 @@ OC . XX CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 +CC Software: v1.5.0 +CC Database: v4.0 CC DOI: 10.1099/mgen.0.000685 CC URL: github.com/oschwengers/bakta CC CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 13:08:00 +CC Annotation Date :: 09/16/2022, 07:32:50 CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 +CC Annotation Software version :: v1.5.0 +CC Annotation Database version :: v4.0 CC CDSs :: 2 CC tRNAs :: 0 CC tmRNAs :: 0 @@ -28,6 +28,7 @@ CC oriCs/oriVs :: 0 CC oriTs :: 0 CC gaps :: 0 +CC pseudogenes :: 0 XX FH Key Location/Qualifiers FH @@ -39,25 +40,25 @@ FT CDS 413..736 FT /product="hypothetical protein" FT /locus_tag="IHHALP_00005" +FT /protein_id="gnl|Bakta|IHHALP_00005" FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL FT MAD" FT /codon_start=1 FT /transl_table=4 -FT /protein_id="gnl|Bakta|IHHALP_00005" FT /inference="ab initio prediction:Prodigal:2.6" FT gene complement(join(971..1330,1..141)) FT /locus_tag="IHHALP_00010" FT CDS complement(join(971..1330,1..141)) FT /product="hypothetical protein" FT /locus_tag="IHHALP_00010" +FT /protein_id="gnl|Bakta|IHHALP_00010" FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG FT IPI" FT /codon_start=1 FT /transl_table=4 -FT /protein_id="gnl|Bakta|IHHALP_00010" FT /inference="ab initio prediction:Prodigal:2.6" XX SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
--- a/test-data/TEST_4/TEST_4.gbff Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.gbff Fri Sep 16 13:42:15 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS p2 1330 bp DNA circular BCT 22-AUG-2022 +LOCUS p2 1330 bp DNA circular BCT 16-SEP-2022 DEFINITION plasmid pOSAK1, complete sequence. ACCESSION p2 VERSION p2 @@ -7,16 +7,16 @@ ORGANISM . . COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 + Software: v1.5.0 + Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 13:08:00 + Annotation Date :: 09/16/2022, 07:32:50 Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 + Annotation Software version :: v1.5.0 + Annotation Database version :: v4.0 CDSs :: 2 tRNAs :: 0 tmRNAs :: 0 @@ -27,6 +27,7 @@ oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 + pseudogenes :: 0 FEATURES Location/Qualifiers source 1..1330 /mol_type="genomic DNA" @@ -36,25 +37,25 @@ CDS 413..736 /product="hypothetical protein" /locus_tag="IHHALP_00005" + /protein_id="gnl|Bakta|IHHALP_00005" /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL MAD" /codon_start=1 /transl_table=4 - /protein_id="gnl|Bakta|IHHALP_00005" /inference="ab initio prediction:Prodigal:2.6" gene complement(join(971..1330,1..141)) /locus_tag="IHHALP_00010" CDS complement(join(971..1330,1..141)) /product="hypothetical protein" /locus_tag="IHHALP_00010" + /protein_id="gnl|Bakta|IHHALP_00010" /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG IPI" /codon_start=1 /transl_table=4 - /protein_id="gnl|Bakta|IHHALP_00010" /inference="ab initio prediction:Prodigal:2.6" ORIGIN 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
--- a/test-data/TEST_4/TEST_4.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.gff3 Fri Sep 16 13:42:15 2022 +0000 @@ -1,8 +1,8 @@ ##gff-version 3 ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo # Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 +# Software: v1.5.0 +# Database: v4.0 # DOI: 10.1099/mgen.0.000685 # URL: github.com/oschwengers/bakta ##sequence-region p2 1 1330
--- a/test-data/TEST_4/TEST_4.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.hypotheticals.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta v1.5.0, https://github.com/oschwengers/bakta +#Database v4.0, https://doi.org/10.5281/zenodo.4247252 #Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs p2 413 736 + IHHALP_00005 12.1 10.4 p2 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/TEST_4/TEST_4.json Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.json Fri Sep 16 13:42:15 2022 +0000 @@ -79,11 +79,11 @@ } ], "run": { - "start": "2022-08-22 13:07:59", - "end": "2022-08-22 13:08:00" + "start": "2022-09-16 07:32:48", + "end": "2022-09-16 07:32:50" }, "version": { - "bakta": "1.4.2", - "db": "3.0" + "bakta": "1.5.0", + "db": "4.0" } } \ No newline at end of file
--- a/test-data/TEST_4/TEST_4.log Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.log Fri Sep 16 13:42:15 2022 +0000 @@ -29,7 +29,10 @@ protein sequences: 0 user protein sequences: 0 combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 + detect pseudogenes... + pseudogene candidates: 0 + found pseudogenes: 0 +analyze hypothetical proteins: 2 detected Pfam hits: 0 calculated proteins statistics revise special cases... @@ -69,13 +72,14 @@ CRISPR arrays: 0 CDSs: 2 hypotheticals: 2 + pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 -export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/12/working +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/12/working human readable TSV... GFF3... INSDC GenBank & EMBL...
--- a/test-data/TEST_4/TEST_4.tsv Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.tsv Fri Sep 16 13:42:15 2022 +0000 @@ -1,5 +1,5 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 +#Annotated with Bakta (v1.5.0): https://github.com/oschwengers/bakta +#Database (v4.0): https://doi.org/10.5281/zenodo.4247252 #Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs p2 cds 413 736 + IHHALP_00005 hypothetical protein p2 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/TEST_4/TEST_4.txt Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_4/TEST_4.txt Fri Sep 16 13:42:15 2022 +0000 @@ -14,6 +14,7 @@ ncRNA regions: 0 CRISPR arrays: 0 CDSs: 2 +pseudogenes: 0 hypotheticals: 2 signal peptides: 0 sORFs: 0 @@ -23,7 +24,7 @@ oriTs: 0 Bakta: -Software: v1.4.2 -Database: v3.0 +Software: v1.5.0 +Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta
--- a/test-data/TEST_5/TEST_5.log Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_5/TEST_5.log Fri Sep 16 13:42:15 2022 +0000 @@ -35,13 +35,14 @@ CRISPR arrays: 0 CDSs: 0 hypotheticals: 0 + pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 -export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/14/working +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/14/working human readable TSV... GFF3... INSDC GenBank & EMBL...
--- a/test-data/TEST_5/TEST_5.txt Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/TEST_5/TEST_5.txt Fri Sep 16 13:42:15 2022 +0000 @@ -14,6 +14,7 @@ ncRNA regions: 0 CRISPR arrays: 0 CDSs: 0 +pseudogenes: 0 hypotheticals: 0 signal peptides: 0 sORFs: 0 @@ -23,7 +24,7 @@ oriTs: 0 Bakta: -Software: v1.4.2 -Database: v3.0 +Software: v1.5.0 +Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta
--- a/test-data/test-db/version.json Thu Sep 01 17:28:43 2022 +0000 +++ b/test-data/test-db/version.json Fri Sep 16 13:42:15 2022 +0000 @@ -1,6 +1,6 @@ { - "date": "2021-08-9", - "major": 3, + "date": "2022-08-25", + "major": 4, "minor": 0, "dependencies": [ {
--- a/test-data/tmp/NC_002127.1.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ ->NC_002127.1 Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTT -TCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCA -TCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGT -CTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGC -TTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTA -TTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAG -GAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTA -AGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAA -ACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTAT -CACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTA -TGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGT -TCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGA -ATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTT -TAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTA -ACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATT -AAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG
--- a/test-data/tmp/TEST_1/TEST_1.embl Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,87 +0,0 @@ -ID contig_1; ; circular; DNA; ; PRO; 1330 BP. -XX -AC contig_1; -XX -DE plasmid unnamed1, complete sequence -XX -OS . -OC . -XX -CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 -CC DOI: 10.1099/mgen.0.000685 -CC URL: github.com/oschwengers/bakta -CC -CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 12:57:48 -CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 -CC CDSs :: 2 -CC tRNAs :: 0 -CC tmRNAs :: 0 -CC rRNAs :: 0 -CC ncRNAs :: 0 -CC regulatory ncRNAs :: 0 -CC CRISPR Arrays :: 0 -CC oriCs/oriVs :: 0 -CC oriTs :: 0 -CC gaps :: 0 -XX -FH Key Location/Qualifiers -FH -FT source 1..1330 -FT /mol_type="genomic DNA" -FT /plasmid="unnamed1" -FT gene 413..736 -FT /locus_tag="IHHALP_00005" -FT CDS 413..736 -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00005" -FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA -FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL -FT MAD" -FT /codon_start=1 -FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00005" -FT /inference="ab initio prediction:Prodigal:2.6" -FT gene complement(join(971..1330,1..141)) -FT /locus_tag="IHHALP_00010" -FT CDS complement(join(971..1330,1..141)) -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00010" -FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA -FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR -FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG -FT IPI" -FT /codon_start=1 -FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00010" -FT /inference="ab initio prediction:Prodigal:2.6" -XX -SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; - ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 - gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 - agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 - tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 - tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 - gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 - cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 - acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 - agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 - acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 - agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 - cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 - gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 - aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 - tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 - agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 - tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 - ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 - cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 - taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 - aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 - tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 - cttctatttg 1330 -//
--- a/test-data/tmp/TEST_1/TEST_1.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_1/TEST_1.ffn Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG ->IHHALP_00010 hypothetical protein -ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA
--- a/test-data/tmp/TEST_1/TEST_1.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ ->contig_1 [completeness=complete] [topology=circular] [gcode=11] -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_1/TEST_1.gbff Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,83 +0,0 @@ -LOCUS contig_1 1330 bp DNA circular BCT 22-AUG-2022 -DEFINITION plasmid unnamed1, complete sequence. -ACCESSION contig_1 -VERSION contig_1 -KEYWORDS . -SOURCE None - ORGANISM . - . -COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 - DOI: 10.1099/mgen.0.000685 - URL: github.com/oschwengers/bakta - - ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 12:57:48 - Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 - CDSs :: 2 - tRNAs :: 0 - tmRNAs :: 0 - rRNAs :: 0 - ncRNAs :: 0 - regulatory ncRNAs :: 0 - CRISPR Arrays :: 0 - oriCs/oriVs :: 0 - oriTs :: 0 - gaps :: 0 -FEATURES Location/Qualifiers - source 1..1330 - /mol_type="genomic DNA" - /plasmid="unnamed1" - gene 413..736 - /locus_tag="IHHALP_00005" - CDS 413..736 - /product="hypothetical protein" - /locus_tag="IHHALP_00005" - /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA - AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL - MAD" - /codon_start=1 - /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00005" - /inference="ab initio prediction:Prodigal:2.6" - gene complement(join(971..1330,1..141)) - /locus_tag="IHHALP_00010" - CDS complement(join(971..1330,1..141)) - /product="hypothetical protein" - /locus_tag="IHHALP_00010" - /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA - EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR - YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG - IPI" - /codon_start=1 - /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00010" - /inference="ab initio prediction:Prodigal:2.6" -ORIGIN - 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc - 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc - 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg - 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt - 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt - 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac - 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa - 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga - 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt - 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga - 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga - 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag - 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt - 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga - 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc - 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc - 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa - 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat - 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat - 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa - 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc - 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg - 1321 cttctatttg -//
--- a/test-data/tmp/TEST_1/TEST_1.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,36 +0,0 @@ -##gff-version 3 -##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo -# Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 -# DOI: 10.1099/mgen.0.000685 -# URL: github.com/oschwengers/bakta -##sequence-region contig_1 1 1330 -contig_1 Bakta region 1 1330 . + . ID=contig_1;Name=contig_1;Is_circular=true -contig_1 Prodigal CDS 413 736 . + 0 ID=IHHALP_00005;Name=hypothetical protein;locus_tag=IHHALP_00005;product=hypothetical protein -contig_1 Prodigal CDS 971 1471 . - 0 ID=IHHALP_00010;Name=hypothetical protein;locus_tag=IHHALP_00010;product=hypothetical protein -##FASTA ->contig_1 -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_1/TEST_1.hypotheticals.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_1/TEST_1.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs -contig_1 413 736 + IHHALP_00005 12.1 10.4 -contig_1 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/tmp/TEST_1/TEST_1.json Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,90 +0,0 @@ -{ - "genome": { - "genus": null, - "species": null, - "strain": null, - "complete": true, - "gram": "?", - "translation_table": 11 - }, - "stats": { - "no_sequences": 1, - "size": 1330, - "gc": 0.4518796992481203, - "n_ratio": 0.0, - "n50": 1330, - "coding_ratio": 0.6203007518796992 - }, - "features": [ - { - "type": "cds", - "contig": "contig_1", - "start": 413, - "stop": 736, - "strand": "+", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "GGAG/GAGG", - "db_xrefs": [], - "frame": 2, - "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", - "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", - "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 12072.90819999999, - "isoelectric_point": 10.367886161804197 - }, - "id": "IHHALPPJCH_1", - "locus": "IHHALP_00005" - }, - { - "type": "cds", - "contig": "contig_1", - "start": 971, - "stop": 141, - "strand": "-", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "AGGA/GGAG/GAGG", - "db_xrefs": [], - "frame": 1, - "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", - "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", - "edge": true, - "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 18866.325799999995, - "isoelectric_point": 7.696590614318848 - }, - "id": "IHHALPPJCH_2", - "locus": "IHHALP_00010" - } - ], - "sequences": [ - { - "id": "contig_1", - "description": "[completeness=complete] [topology=circular] [gcode=11]", - "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG", - "length": 1330, - "complete": true, - "type": "plasmid", - "topology": "circular", - "simple_id": "contig_1", - "orig_id": "NC_002127.1", - "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", - "name": "unnamed1" - } - ], - "run": { - "start": "2022-08-22 12:57:47", - "end": "2022-08-22 12:57:48" - }, - "version": { - "bakta": "1.4.2", - "db": "3.0" - } -} \ No newline at end of file
--- a/test-data/tmp/TEST_1/TEST_1.log Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,90 +0,0 @@ -parse genome sequences... - imported: 1 - filtered & revised: 1 - plasmids: 1 - -start annotation... -predict tRNAs... - found: 0 -predict tmRNAs... - found: 0 -predict rRNAs... - found: 0 -predict ncRNAs... - found: 0 -predict ncRNA regions... - found: 0 -predict CRISPR arrays... - found: 0 -predict & annotate CDSs... - predicted: 2 - discarded spurious: 0 - revised translational exceptions: 0 - detected IPSs: 0 - found PSCs: 0 - found PSCCs: 0 - lookup annotations... - conduct expert systems... - amrfinder: 0 - protein sequences: 0 - combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 - detected Pfam hits: 0 - calculated proteins statistics - revise special cases... -extract sORF... - potential: 22 - discarded due to overlaps: 2 - discarded spurious: 0 - detected IPSs: 0 - found PSCs: 0 - lookup annotations... - filter and combine annotations... - filtered sORFs: 0 -detect gaps... - found: 0 -detect oriCs/oriVs... - found: 0 -detect oriTs... - found: 0 -apply feature overlap filters... -select features and create locus tags... -selected: 2 - -genome statistics: - Genome size: 1,330 bp - Contigs/replicons: 1 - GC: 45.2 % - N50: 1,330 - N ratio: 0.0 % - coding density: 62.0 % - -annotation summary: - tRNAs: 0 - tmRNAs: 0 - rRNAs: 0 - ncRNAs: 0 - ncRNA regions: 0 - CRISPR arrays: 0 - CDSs: 2 - hypotheticals: 2 - signal peptides: 0 - sORFs: 0 - gaps: 0 - oriCs/oriVs: 0 - oriTs: 0 - -export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/2/working - human readable TSV... - GFF3... - INSDC GenBank & EMBL... - genome sequences... - feature nucleotide sequences... - translated CDS sequences... - hypothetical TSV... - translated hypothetical CDS sequences... - machine readable JSON... - genome and annotation summary... - -If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 -Annotation successfully finished in 0:01 [mm:ss].
--- a/test-data/tmp/TEST_1/TEST_1.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs -contig_1 cds 413 736 + IHHALP_00005 hypothetical protein -contig_1 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/tmp/TEST_1/TEST_1.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -Sequence(s): -Length: 1330 -Count: 1 -GC: 45.2 -N50: 1330 -N ratio: 0.0 -coding density: 62.0 - -Annotation: -tRNAs: 0 -tmRNAs: 0 -rRNAs: 0 -ncRNAs: 0 -ncRNA regions: 0 -CRISPR arrays: 0 -CDSs: 2 -hypotheticals: 2 -signal peptides: 0 -sORFs: 0 -gaps: 0 -oriCs: 0 -oriVs: 0 -oriTs: 0 - -Bakta: -Software: v1.4.2 -Database: v3.0 -DOI: 10.1099/mgen.0.000685 -URL: github.com/oschwengers/bakta
--- a/test-data/tmp/TEST_2/TEST_2.embl Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,89 +0,0 @@ -ID NC_002127; SV 1; circular; DNA; ; PRO; 1330 BP. -XX -AC NC_002127; -XX -DE Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence -XX -OS Escherichia coli o157:h7 Sakai -OC . -XX -CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 -CC DOI: 10.1099/mgen.0.000685 -CC URL: github.com/oschwengers/bakta -CC -CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 12:58:03 -CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 -CC CDSs :: 2 -CC tRNAs :: 0 -CC tmRNAs :: 0 -CC rRNAs :: 0 -CC ncRNAs :: 0 -CC regulatory ncRNAs :: 0 -CC CRISPR Arrays :: 0 -CC oriCs/oriVs :: 0 -CC oriTs :: 0 -CC gaps :: 0 -XX -FH Key Location/Qualifiers -FH -FT source 1..1330 -FT /mol_type="genomic DNA" -FT /organism="Escherichia coli o157:h7 Sakai" -FT /strain="Sakai" -FT /plasmid="pOSAK1" -FT gene 413..736 -FT /locus_tag="IHHALP_00005" -FT CDS 413..736 -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00005" -FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA -FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL -FT MAD" -FT /codon_start=1 -FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00005" -FT /inference="ab initio prediction:Prodigal:2.6" -FT gene complement(join(971..1330,1..141)) -FT /locus_tag="IHHALP_00010" -FT CDS complement(join(971..1330,1..141)) -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00010" -FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA -FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR -FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG -FT IPI" -FT /codon_start=1 -FT /transl_table=11 -FT /protein_id="gnl|Bakta|IHHALP_00010" -FT /inference="ab initio prediction:Prodigal:2.6" -XX -SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; - ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 - gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 - agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 - tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 - tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 - gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 - cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 - acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 - agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 - acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 - agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 - cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 - gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 - aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 - tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 - agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 - tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 - ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 - cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 - taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 - aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 - tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 - cttctatttg 1330 -//
--- a/test-data/tmp/TEST_2/TEST_2.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_2/TEST_2.ffn Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG ->IHHALP_00010 hypothetical protein -ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA
--- a/test-data/tmp/TEST_2/TEST_2.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ ->NC_002127.1 Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_2/TEST_2.gbff Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,85 +0,0 @@ -LOCUS NC_002127.1 1330 bp DNA circular BCT 22-AUG-2022 -DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence. -ACCESSION NC_002127 -VERSION NC_002127.1 -KEYWORDS . -SOURCE Escherichia coli o157:h7 Sakai - ORGANISM Escherichia coli o157:h7 Sakai - . -COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 - DOI: 10.1099/mgen.0.000685 - URL: github.com/oschwengers/bakta - - ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 12:58:03 - Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 - CDSs :: 2 - tRNAs :: 0 - tmRNAs :: 0 - rRNAs :: 0 - ncRNAs :: 0 - regulatory ncRNAs :: 0 - CRISPR Arrays :: 0 - oriCs/oriVs :: 0 - oriTs :: 0 - gaps :: 0 -FEATURES Location/Qualifiers - source 1..1330 - /mol_type="genomic DNA" - /organism="Escherichia coli o157:h7 Sakai" - /strain="Sakai" - /plasmid="pOSAK1" - gene 413..736 - /locus_tag="IHHALP_00005" - CDS 413..736 - /product="hypothetical protein" - /locus_tag="IHHALP_00005" - /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA - AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL - MAD" - /codon_start=1 - /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00005" - /inference="ab initio prediction:Prodigal:2.6" - gene complement(join(971..1330,1..141)) - /locus_tag="IHHALP_00010" - CDS complement(join(971..1330,1..141)) - /product="hypothetical protein" - /locus_tag="IHHALP_00010" - /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA - EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR - YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG - IPI" - /codon_start=1 - /transl_table=11 - /protein_id="gnl|Bakta|IHHALP_00010" - /inference="ab initio prediction:Prodigal:2.6" -ORIGIN - 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc - 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc - 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg - 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt - 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt - 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac - 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa - 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga - 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt - 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga - 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga - 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag - 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt - 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga - 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc - 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc - 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa - 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat - 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat - 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa - 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc - 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg - 1321 cttctatttg -//
--- a/test-data/tmp/TEST_2/TEST_2.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,37 +0,0 @@ -##gff-version 3 -##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo -# organism Escherichia coli o157:h7 Sakai -# Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 -# DOI: 10.1099/mgen.0.000685 -# URL: github.com/oschwengers/bakta -##sequence-region NC_002127.1 1 1330 -NC_002127.1 Bakta region 1 1330 . + . ID=NC_002127.1;Name=NC_002127.1;Is_circular=true -NC_002127.1 Prodigal CDS 413 736 . + 0 ID=IHHALP_00005;Name=hypothetical protein;locus_tag=IHHALP_00005;product=hypothetical protein -NC_002127.1 Prodigal CDS 971 1471 . - 0 ID=IHHALP_00010;Name=hypothetical protein;locus_tag=IHHALP_00010;product=hypothetical protein -##FASTA ->NC_002127.1 -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_2/TEST_2.hypotheticals.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_2/TEST_2.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs -NC_002127.1 413 736 + IHHALP_00005 12.1 10.4 -NC_002127.1 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/tmp/TEST_2/TEST_2.json Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,89 +0,0 @@ -{ - "genome": { - "genus": "Escherichia", - "species": "coli o157:h7", - "strain": "Sakai", - "plasmid": "pOSAK1", - "complete": true, - "gram": "?", - "translation_table": 11 - }, - "stats": { - "no_sequences": 1, - "size": 1330, - "gc": 0.4518796992481203, - "n_ratio": 0.0, - "n50": 1330, - "coding_ratio": 0.6203007518796992 - }, - "features": [ - { - "type": "cds", - "contig": "NC_002127.1", - "start": 413, - "stop": 736, - "strand": "+", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "GGAG/GAGG", - "db_xrefs": [], - "frame": 2, - "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", - "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", - "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 12072.90819999999, - "isoelectric_point": 10.367886161804197 - }, - "id": "IHHALPPJCH_1", - "locus": "IHHALP_00005" - }, - { - "type": "cds", - "contig": "NC_002127.1", - "start": 971, - "stop": 141, - "strand": "-", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "AGGA/GGAG/GAGG", - "db_xrefs": [], - "frame": 1, - "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", - "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", - "edge": true, - "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 18866.325799999995, - "isoelectric_point": 7.696590614318848 - }, - "id": "IHHALPPJCH_2", - "locus": "IHHALP_00010" - } - ], - "sequences": [ - { - "id": "NC_002127.1", - "description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", - "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG", - "length": 1330, - "complete": true, - "type": "plasmid", - "topology": "circular", - "simple_id": "contig_1", - "name": "pOSAK1" - } - ], - "run": { - "start": "2022-08-22 12:58:02", - "end": "2022-08-22 12:58:03" - }, - "version": { - "bakta": "1.4.2", - "db": "3.0" - } -} \ No newline at end of file
--- a/test-data/tmp/TEST_2/TEST_2.log Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,88 +0,0 @@ -parse genome sequences... - imported: 1 - filtered & revised: 1 - plasmids: 1 - -start annotation... -skip tRNA prediction... -skip tmRNA prediction... -predict rRNAs... - found: 0 -predict ncRNAs... - found: 0 -predict ncRNA regions... - found: 0 -predict CRISPR arrays... - found: 0 -predict & annotate CDSs... - predicted: 2 - discarded spurious: 0 - revised translational exceptions: 0 - detected IPSs: 0 - found PSCs: 0 - found PSCCs: 0 - lookup annotations... - conduct expert systems... - amrfinder: 0 - protein sequences: 0 - combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 - detected Pfam hits: 0 - calculated proteins statistics - revise special cases... -extract sORF... - potential: 22 - discarded due to overlaps: 2 - discarded spurious: 0 - detected IPSs: 0 - found PSCs: 0 - lookup annotations... - filter and combine annotations... - filtered sORFs: 0 -detect gaps... - found: 0 -detect oriCs/oriVs... - found: 0 -detect oriTs... - found: 0 -apply feature overlap filters... -select features and create locus tags... -selected: 2 - -genome statistics: - Genome size: 1,330 bp - Contigs/replicons: 1 - GC: 45.2 % - N50: 1,330 - N ratio: 0.0 % - coding density: 62.0 % - -annotation summary: - tRNAs: 0 - tmRNAs: 0 - rRNAs: 0 - ncRNAs: 0 - ncRNA regions: 0 - CRISPR arrays: 0 - CDSs: 2 - hypotheticals: 2 - signal peptides: 0 - sORFs: 0 - gaps: 0 - oriCs/oriVs: 0 - oriTs: 0 - -export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/4/working - human readable TSV... - GFF3... - INSDC GenBank & EMBL... - genome sequences... - feature nucleotide sequences... - translated CDS sequences... - hypothetical TSV... - translated hypothetical CDS sequences... - machine readable JSON... - genome and annotation summary... - -If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 -Annotation successfully finished in 0:00 [mm:ss].
--- a/test-data/tmp/TEST_2/TEST_2.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs -NC_002127.1 cds 413 736 + IHHALP_00005 hypothetical protein -NC_002127.1 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/tmp/TEST_2/TEST_2.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -Sequence(s): -Length: 1330 -Count: 1 -GC: 45.2 -N50: 1330 -N ratio: 0.0 -coding density: 62.0 - -Annotation: -tRNAs: 0 -tmRNAs: 0 -rRNAs: 0 -ncRNAs: 0 -ncRNA regions: 0 -CRISPR arrays: 0 -CDSs: 2 -hypotheticals: 2 -signal peptides: 0 -sORFs: 0 -gaps: 0 -oriCs: 0 -oriVs: 0 -oriTs: 0 - -Bakta: -Software: v1.4.2 -Database: v3.0 -DOI: 10.1099/mgen.0.000685 -URL: github.com/oschwengers/bakta
--- a/test-data/tmp/TEST_3/TEST_3.embl Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,62 +0,0 @@ -ID contig_1; ; circular; DNA; ; PRO; 1330 BP. -XX -AC contig_1; -XX -DE plasmid unnamed1, complete sequence -XX -OS . -OC . -XX -CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 -CC DOI: 10.1099/mgen.0.000685 -CC URL: github.com/oschwengers/bakta -CC -CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 12:58:17 -CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 -CC CDSs :: 0 -CC tRNAs :: 0 -CC tmRNAs :: 0 -CC rRNAs :: 0 -CC ncRNAs :: 0 -CC regulatory ncRNAs :: 0 -CC CRISPR Arrays :: 0 -CC oriCs/oriVs :: 0 -CC oriTs :: 0 -CC gaps :: 0 -XX -FH Key Location/Qualifiers -FH -FT source 1..1330 -FT /mol_type="genomic DNA" -FT /plasmid="unnamed1" -XX -SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; - ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 - gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 - agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 - tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 - tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 - gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 - cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 - acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 - agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 - acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 - agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 - cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 - gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 - aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 - tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 - agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 - tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 - ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 - cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 - taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 - aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 - tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 - cttctatttg 1330 -//
--- a/test-data/tmp/TEST_3/TEST_3.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ ->contig_1 [completeness=complete] [topology=circular] [gcode=11] -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_3/TEST_3.gbff Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,58 +0,0 @@ -LOCUS contig_1 1330 bp DNA circular BCT 22-AUG-2022 -DEFINITION plasmid unnamed1, complete sequence. -ACCESSION contig_1 -VERSION contig_1 -KEYWORDS . -SOURCE None - ORGANISM . - . -COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 - DOI: 10.1099/mgen.0.000685 - URL: github.com/oschwengers/bakta - - ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 12:58:17 - Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 - CDSs :: 0 - tRNAs :: 0 - tmRNAs :: 0 - rRNAs :: 0 - ncRNAs :: 0 - regulatory ncRNAs :: 0 - CRISPR Arrays :: 0 - oriCs/oriVs :: 0 - oriTs :: 0 - gaps :: 0 -FEATURES Location/Qualifiers - source 1..1330 - /mol_type="genomic DNA" - /plasmid="unnamed1" -ORIGIN - 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc - 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc - 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg - 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt - 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt - 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac - 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa - 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga - 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt - 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga - 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga - 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag - 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt - 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga - 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc - 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc - 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa - 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat - 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat - 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa - 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc - 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg - 1321 cttctatttg -//
--- a/test-data/tmp/TEST_3/TEST_3.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,34 +0,0 @@ -##gff-version 3 -##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo -# Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 -# DOI: 10.1099/mgen.0.000685 -# URL: github.com/oschwengers/bakta -##sequence-region contig_1 1 1330 -contig_1 Bakta region 1 1330 . + . ID=contig_1;Name=contig_1;Is_circular=true -##FASTA ->contig_1 -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_3/TEST_3.json Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,42 +0,0 @@ -{ - "genome": { - "genus": null, - "species": null, - "strain": null, - "complete": true, - "gram": "?", - "translation_table": 11 - }, - "stats": { - "no_sequences": 1, - "size": 1330, - "gc": 0.4518796992481203, - "n_ratio": 0.0, - "n50": 1330, - "coding_ratio": 0.0 - }, - "features": [], - "sequences": [ - { - "id": "contig_1", - "description": "[completeness=complete] [topology=circular] [gcode=11]", - "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG", - "length": 1330, - "complete": true, - "type": "plasmid", - "topology": "circular", - "simple_id": "contig_1", - "orig_id": "NC_002127.1", - "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", - "name": "unnamed1" - } - ], - "run": { - "start": "2022-08-22 12:58:17", - "end": "2022-08-22 12:58:17" - }, - "version": { - "bakta": "1.4.2", - "db": "3.0" - } -} \ No newline at end of file
--- a/test-data/tmp/TEST_3/TEST_3.log Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,55 +0,0 @@ -parse genome sequences... - imported: 1 - filtered & revised: 1 - plasmids: 1 - -start annotation... -skip tRNA prediction... -skip tmRNA prediction... -skip rRNA prediction... -skip ncRNA prediction... -skip ncRNA region prediction... -skip CRISPR array prediction... -skip CDS prediction... -skip sORF prediction... -skip gap annotation... -skip oriC/T annotation... -apply feature overlap filters... -select features and create locus tags... -selected: 0 - -genome statistics: - Genome size: 1,330 bp - Contigs/replicons: 1 - GC: 45.2 % - N50: 1,330 - N ratio: 0.0 % - coding density: 0.0 % - -annotation summary: - tRNAs: 0 - tmRNAs: 0 - rRNAs: 0 - ncRNAs: 0 - ncRNA regions: 0 - CRISPR arrays: 0 - CDSs: 0 - hypotheticals: 0 - signal peptides: 0 - sORFs: 0 - gaps: 0 - oriCs/oriVs: 0 - oriTs: 0 - -export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/6/working - human readable TSV... - GFF3... - INSDC GenBank & EMBL... - genome sequences... - feature nucleotide sequences... - translated CDS sequences... - machine readable JSON... - genome and annotation summary... - -If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 -Annotation successfully finished in 0:00 [mm:ss].
--- a/test-data/tmp/TEST_3/TEST_3.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs
--- a/test-data/tmp/TEST_3/TEST_3.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -Sequence(s): -Length: 1330 -Count: 1 -GC: 45.2 -N50: 1330 -N ratio: 0.0 -coding density: 0.0 - -Annotation: -tRNAs: 0 -tmRNAs: 0 -rRNAs: 0 -ncRNAs: 0 -ncRNA regions: 0 -CRISPR arrays: 0 -CDSs: 0 -hypotheticals: 0 -signal peptides: 0 -sORFs: 0 -gaps: 0 -oriCs: 0 -oriVs: 0 -oriTs: 0 - -Bakta: -Software: v1.4.2 -Database: v3.0 -DOI: 10.1099/mgen.0.000685 -URL: github.com/oschwengers/bakta
--- a/test-data/tmp/TEST_4/TEST_4.embl Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,87 +0,0 @@ -ID p2; ; circular; DNA; ; PRO; 1330 BP. -XX -AC p2; -XX -DE plasmid pOSAK1, complete sequence -XX -OS . -OC . -XX -CC Annotated with Bakta -CC Software: v1.4.2 -CC Database: v3.0 -CC DOI: 10.1099/mgen.0.000685 -CC URL: github.com/oschwengers/bakta -CC -CC ##Genome Annotation Summary:## -CC Annotation Date :: 08/22/2022, 12:58:56 -CC Annotation Pipeline :: Bakta -CC Annotation Software version :: v1.4.2 -CC Annotation Database version :: v3.0 -CC CDSs :: 2 -CC tRNAs :: 0 -CC tmRNAs :: 0 -CC rRNAs :: 0 -CC ncRNAs :: 0 -CC regulatory ncRNAs :: 0 -CC CRISPR Arrays :: 0 -CC oriCs/oriVs :: 0 -CC oriTs :: 0 -CC gaps :: 0 -XX -FH Key Location/Qualifiers -FH -FT source 1..1330 -FT /mol_type="genomic DNA" -FT /plasmid="pOSAK1" -FT gene 413..736 -FT /locus_tag="IHHALP_00005" -FT CDS 413..736 -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00005" -FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA -FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL -FT MAD" -FT /codon_start=1 -FT /transl_table=4 -FT /protein_id="gnl|Bakta|IHHALP_00005" -FT /inference="ab initio prediction:Prodigal:2.6" -FT gene complement(join(971..1330,1..141)) -FT /locus_tag="IHHALP_00010" -FT CDS complement(join(971..1330,1..141)) -FT /product="hypothetical protein" -FT /locus_tag="IHHALP_00010" -FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA -FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR -FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG -FT IPI" -FT /codon_start=1 -FT /transl_table=4 -FT /protein_id="gnl|Bakta|IHHALP_00010" -FT /inference="ab initio prediction:Prodigal:2.6" -XX -SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; - ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 - gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 - agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 - tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 - tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 - gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 - cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 - acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 - agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 - acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 - agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 - cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 - gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 - aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 - tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 - agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 - tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 - ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 - cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 - taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 - aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 - tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 - cttctatttg 1330 -//
--- a/test-data/tmp/TEST_4/TEST_4.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_4/TEST_4.ffn Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG ->IHHALP_00010 hypothetical protein -ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA
--- a/test-data/tmp/TEST_4/TEST_4.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ ->p2 [completeness=complete] [topology=circular] [gcode=4] [plasmid-name=pOSAK1] -TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC -GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC -AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG -TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT -TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT -GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC -CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA -ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA -AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT -ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA -AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA -CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG -GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT -AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA -TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC -AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC -TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA -GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT -CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT -TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA -AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC -TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG -CTTCTATTTG
--- a/test-data/tmp/TEST_4/TEST_4.gbff Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,83 +0,0 @@ -LOCUS p2 1330 bp DNA circular BCT 22-AUG-2022 -DEFINITION plasmid pOSAK1, complete sequence. -ACCESSION p2 -VERSION p2 -KEYWORDS . -SOURCE None - ORGANISM . - . -COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 - DOI: 10.1099/mgen.0.000685 - URL: github.com/oschwengers/bakta - - ##Genome Annotation Summary:## - Annotation Date :: 08/22/2022, 12:58:56 - Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 - CDSs :: 2 - tRNAs :: 0 - tmRNAs :: 0 - rRNAs :: 0 - ncRNAs :: 0 - regulatory ncRNAs :: 0 - CRISPR Arrays :: 0 - oriCs/oriVs :: 0 - oriTs :: 0 - gaps :: 0 -FEATURES Location/Qualifiers - source 1..1330 - /mol_type="genomic DNA" - /plasmid="pOSAK1" - gene 413..736 - /locus_tag="IHHALP_00005" - CDS 413..736 - /product="hypothetical protein" - /locus_tag="IHHALP_00005" - /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA - AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL - MAD" - /codon_start=1 - /transl_table=4 - /protein_id="gnl|Bakta|IHHALP_00005" - /inference="ab initio prediction:Prodigal:2.6" - gene complement(join(971..1330,1..141)) - /locus_tag="IHHALP_00010" - CDS complement(join(971..1330,1..141)) - /product="hypothetical protein" - /locus_tag="IHHALP_00010" - /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA - EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR - YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG - IPI" - /codon_start=1 - /transl_table=4 - /protein_id="gnl|Bakta|IHHALP_00010" - /inference="ab initio prediction:Prodigal:2.6" -ORIGIN - 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc - 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc - 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg - 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt - 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt - 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac - 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa - 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga - 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt - 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga - 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga - 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag - 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt - 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga - 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc - 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc - 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa - 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat - 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat - 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa - 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc - 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg - 1321 cttctatttg -//
--- a/test-data/tmp/TEST_4/TEST_4.gff3 Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -##gff-version 3 -##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo -# Annotated with Bakta -# Software: v1.4.2 -# Database: v3.0 -# DOI: 10.1099/mgen.0.000685 -# URL: github.com/oschwengers/bakta -##sequence-region p2 1 1330 -p2 Bakta region 1 1330 . + . ID=p2;Name=p2;Is_circular=true -p2 Prodigal gene 413 736 . + . ID=IHHALP_00005_gene;locus_tag=IHHALP_00005 -p2 Prodigal CDS 413 736 . + 0 ID=IHHALP_00005;Name=hypothetical protein;locus_tag=IHHALP_00005;product=hypothetical protein;Parent=IHHALP_00005_gene;inference=ab initio prediction:Prodigal:2.6 -p2 Prodigal gene 971 1471 . - . ID=IHHALP_00010_gene;locus_tag=IHHALP_00010 -p2 Prodigal CDS 971 1471 . - 0 ID=IHHALP_00010;Name=hypothetical protein;locus_tag=IHHALP_00010;product=hypothetical protein;Parent=IHHALP_00010_gene;inference=ab initio prediction:Prodigal:2.6
--- a/test-data/tmp/TEST_4/TEST_4.hypotheticals.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->IHHALP_00005 hypothetical protein -MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD ->IHHALP_00010 hypothetical protein -MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
--- a/test-data/tmp/TEST_4/TEST_4.hypotheticals.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta v1.4.2, https://github.com/oschwengers/bakta -#Database v3.0, https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Start Stop Strand Locus Tag Mol Weight [kDa] Iso El. Point Pfam hits Dbxrefs -p2 413 736 + IHHALP_00005 12.1 10.4 -p2 971 141 - IHHALP_00010 18.9 7.7
--- a/test-data/tmp/TEST_4/TEST_4.json Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,89 +0,0 @@ -{ - "genome": { - "genus": null, - "species": null, - "strain": null, - "complete": true, - "gram": "?", - "translation_table": 4 - }, - "stats": { - "no_sequences": 1, - "size": 1330, - "gc": 0.4518796992481203, - "n_ratio": 0.0, - "n50": 1330, - "coding_ratio": 0.6203007518796992 - }, - "features": [ - { - "type": "cds", - "contig": "p2", - "start": 413, - "stop": 736, - "strand": "+", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "GGAG/GAGG", - "db_xrefs": [], - "frame": 2, - "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", - "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", - "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 12072.90819999999, - "isoelectric_point": 10.367886161804197 - }, - "id": "IHHALPPJCH_1", - "locus": "IHHALP_00005" - }, - { - "type": "cds", - "contig": "p2", - "start": 971, - "stop": 141, - "strand": "-", - "gene": null, - "product": "hypothetical protein", - "start_type": "ATG", - "rbs_motif": "AGGA/GGAG/GAGG", - "db_xrefs": [], - "frame": 1, - "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", - "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", - "edge": true, - "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", - "hypothetical": true, - "seq_stats": { - "molecular_weight": 18866.325799999995, - "isoelectric_point": 7.696590614318848 - }, - "id": "IHHALPPJCH_2", - "locus": "IHHALP_00010" - } - ], - "sequences": [ - { - "id": "p2", - "description": "[completeness=complete] [topology=circular] [gcode=4] [plasmid-name=pOSAK1]", - "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG", - "length": 1330, - "complete": true, - "type": "plasmid", - "topology": "circular", - "orig_id": "NC_002127.1", - "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", - "name": "pOSAK1" - } - ], - "run": { - "start": "2022-08-22 12:58:54", - "end": "2022-08-22 12:58:56" - }, - "version": { - "bakta": "1.4.2", - "db": "3.0" - } -} \ No newline at end of file
--- a/test-data/tmp/TEST_4/TEST_4.log Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,91 +0,0 @@ -parse genome sequences... - imported: 1 - filtered & revised: 1 - plasmids: 1 - -start annotation... -predict tRNAs... - found: 0 -predict tmRNAs... - found: 0 -predict rRNAs... - found: 0 -predict ncRNAs... - found: 0 -predict ncRNA regions... - found: 0 -predict CRISPR arrays... - found: 0 -predict & annotate CDSs... - predicted: 2 - discarded spurious: 0 - revised translational exceptions: 0 - detected IPSs: 0 - found PSCs: 0 - found PSCCs: 0 - lookup annotations... - conduct expert systems... - amrfinder: 0 - protein sequences: 0 - user protein sequences: 0 - combine annotations and mark hypotheticals... - analyze hypothetical proteins: 2 - detected Pfam hits: 0 - calculated proteins statistics - revise special cases... -extract sORF... - potential: 16 - discarded due to overlaps: 2 - discarded spurious: 0 - detected IPSs: 0 - found PSCs: 0 - lookup annotations... - filter and combine annotations... - filtered sORFs: 0 -detect gaps... - found: 0 -detect oriCs/oriVs... - found: 0 -detect oriTs... - found: 0 -apply feature overlap filters... -select features and create locus tags... -selected: 2 - -genome statistics: - Genome size: 1,330 bp - Contigs/replicons: 1 - GC: 45.2 % - N50: 1,330 - N ratio: 0.0 % - coding density: 62.0 % - -annotation summary: - tRNAs: 0 - tmRNAs: 0 - rRNAs: 0 - ncRNAs: 0 - ncRNA regions: 0 - CRISPR arrays: 0 - CDSs: 2 - hypotheticals: 2 - signal peptides: 0 - sORFs: 0 - gaps: 0 - oriCs/oriVs: 0 - oriTs: 0 - -export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/12/working - human readable TSV... - GFF3... - INSDC GenBank & EMBL... - genome sequences... - feature nucleotide sequences... - translated CDS sequences... - hypothetical TSV... - translated hypothetical CDS sequences... - machine readable JSON... - genome and annotation summary... - -If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 -Annotation successfully finished in 0:01 [mm:ss].
--- a/test-data/tmp/TEST_4/TEST_4.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#Annotated with Bakta (v1.4.2): https://github.com/oschwengers/bakta -#Database (v3.0): https://doi.org/10.5281/zenodo.4247252 -#Sequence Id Type Start Stop Strand Locus Tag Gene Product DbXrefs -p2 cds 413 736 + IHHALP_00005 hypothetical protein -p2 cds 971 141 - IHHALP_00010 hypothetical protein
--- a/test-data/tmp/TEST_4/TEST_4.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -Sequence(s): -Length: 1330 -Count: 1 -GC: 45.2 -N50: 1330 -N ratio: 0.0 -coding density: 62.0 - -Annotation: -tRNAs: 0 -tmRNAs: 0 -rRNAs: 0 -ncRNAs: 0 -ncRNA regions: 0 -CRISPR arrays: 0 -CDSs: 2 -hypotheticals: 2 -signal peptides: 0 -sORFs: 0 -gaps: 0 -oriCs: 0 -oriVs: 0 -oriTs: 0 - -Bakta: -Software: v1.4.2 -Database: v3.0 -DOI: 10.1099/mgen.0.000685 -URL: github.com/oschwengers/bakta
--- a/test-data/tmp/TEST_5/TEST_5.log Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,55 +0,0 @@ -parse genome sequences... - imported: 1 - filtered & revised: 1 - plasmids: 1 - -start annotation... -skip tRNA prediction... -skip tmRNA prediction... -skip rRNA prediction... -skip ncRNA prediction... -skip ncRNA region prediction... -skip CRISPR array prediction... -skip CDS prediction... -skip sORF prediction... -skip gap annotation... -skip oriC/T annotation... -apply feature overlap filters... -select features and create locus tags... -selected: 0 - -genome statistics: - Genome size: 1,330 bp - Contigs/replicons: 1 - GC: 45.2 % - N50: 1,330 - N ratio: 0.0 % - coding density: 0.0 % - -annotation summary: - tRNAs: 0 - tmRNAs: 0 - rRNAs: 0 - ncRNAs: 0 - ncRNA regions: 0 - CRISPR arrays: 0 - CDSs: 0 - hypotheticals: 0 - signal peptides: 0 - sORFs: 0 - gaps: 0 - oriCs/oriVs: 0 - oriTs: 0 - -export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/14/working - human readable TSV... - GFF3... - INSDC GenBank & EMBL... - genome sequences... - feature nucleotide sequences... - translated CDS sequences... - machine readable JSON... - genome and annotation summary... - -If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 -Annotation successfully finished in 0:00 [mm:ss].
--- a/test-data/tmp/TEST_5/TEST_5.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -Sequence(s): -Length: 1330 -Count: 1 -GC: 45.2 -N50: 1330 -N ratio: 0.0 -coding density: 0.0 - -Annotation: -tRNAs: 0 -tmRNAs: 0 -rRNAs: 0 -ncRNAs: 0 -ncRNA regions: 0 -CRISPR arrays: 0 -CDSs: 0 -hypotheticals: 0 -signal peptides: 0 -sORFs: 0 -gaps: 0 -oriCs: 0 -oriVs: 0 -oriTs: 0 - -Bakta: -Software: v1.4.2 -Database: v3.0 -DOI: 10.1099/mgen.0.000685 -URL: github.com/oschwengers/bakta
--- a/test-data/tmp/replicons.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -NC_002695.2 c1 c c - -NC_002128.1 p1 plasmid c pO157 -NC_002127.1 p2 p c pOSAK1
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-mutation.tab Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -#taxgroup accession_version mutation_position mutation_symbol class subclass mutated_protein_name -Escherichia WP_000019358.1 12 soxS_A12S MULTIDRUG AMPICILLIN/CHLORAMPHENICOL/QUINOLONE/RIFAMPIN/TETRACYCLINE Escherichia_ampicillin/chloramphenicol/quinolone/rifampin/tetracycline_resistant_SoxS
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-suppress Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -#taxgroup protein_accession protein_gi -Escherichia AAA21095.1 151858
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/AMRProt-susceptible.tab Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -#taxgroup gene_symbol accession_version resistance_cutoff class subclass resistance_protein_name -Streptococcus_pneumoniae pbp1a WP_001040013.1 99.000000 BETA-LACTAM BETA-LACTAM Streptococcus_pneumoniae_beta-lactam_resistant_PBP1A
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/database_format_version.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -3.10.16
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/fam.tab Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1744 +0,0 @@ -#node_id parent_node_id gene_symbol hmm_id hmm_tc1 hmm_tc2 blastrule_complete_ident blastrule_complete_wp_coverage blastrule_complete_br_coverage blastrule_partial_ident blastrule_partial_wp_coverage blastrule_partial_br_coverage reportable type subtype class subclass family_name -ACID STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS ACID -ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 -AME AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR aminoglycoside modifying enzymes -AMR ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR -BIOCIDE STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS BIOCIDE -BcII bla-B1 bla2 NF033095.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BcII family subclass B1 metallo-beta-lactamase -CDF_efflux METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CDF family cation efflux transporter -CMY2-MIR-ACT-EC bla-C ampC NF012173.1 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CMY2/MIR/ACT/EC family class C beta-lactamase -EFFLUX AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR efflux -HARLDQ_not_B3 bla-B3 - NF000405.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR HARLDQ motif MBL-fold protein -HEAT STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS HEAT -HTH_5 METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ArsR/SmtB family metalloregulatory transcriptional repressor -LHR_hdeD HEAT hdeD-GI - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 STRESS HEAT heat resistance membrane protein HdeD-GI -LHR_hsp20A HEAT hsp20 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS HEAT small heat shock protein sHSP20 -LHR_hsp20B HEAT shsP - 0.00 0.00 93.00 90.00 90.00 94.00 90.00 25.00 1 STRESS HEAT small heat shock protein sHSP20-GI -LHR_kefB HEAT kefB-GI - 0.00 0.00 86.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance system K+/H+ antiporter KefB-GI -LHR_psiE HEAT psi-GI - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein PsiE-GI -LHR_trx HEAT trxLHR - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance system thioredoxin Trx-GI -LHR_yfdX1 HEAT yfdX1 - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein YfdX1 -LHR_yfdX2 HEAT yfdX2 - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein YfdX2 -MATE_efflux EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux MATE transporter -METAL-RND-IM METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL cation efflux RND transporter permease subunit -METAL STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL Metal Resistance -MFS_efflux_CHL MFS_efflux cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter -MFS_efflux_qac BIOCIDE qac NF000089.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacA/B family quaternary ammonium compound efflux MFS transporter -MFS_efflux EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux MFS transporter -MerP_Gneg merP merP TIGR02052.1 92.55 92.55 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system periplasmic binding protein MerP -OM_sidero VIRULENCE_Ecoli - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE TonB-dependent siderophore receptor -P-type_ATPase METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL metal-translocating P-type ATPase -PERI-SENSOR METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL periplasmic heavy metal sensor -RESPONSE_REG AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR DNA-binding response regulator -RND-IM EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux RND transporter permease subunit -RND-OM EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux transporter outer membrane subunit -RND-peri EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux RND transporter periplasmic adaptor subunit -SMR_efflux_bcrB SMR_efflux bcrB NF033469.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE BACITRACIN BACITRACIN quaternary ammonium compound efflux SMR transporter BcrB -SMR_efflux_bcrC SMR_efflux bcrC NF033470.1 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE BACITRACIN BACITRACIN quaternary ammonium compound efflux SMR transporter BcrC -SMR_efflux_emrE SMR_efflux emrE NF000336.1 195.00 195.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux SMR transporter EmrE -SMR_efflux_smr SMR_efflux smr NF000280.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM multidrug efflux SMR transporter Smr -SMR_efflux BIOCIDE qac - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM SMR family small multidrug resistance efflux protein -SMR_qac_int SMR_efflux qac NF033137.0 188.00 188.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM Qac family quaternary ammonium compound efflux SMR transporter -SMR_qac_pB8 SMR_efflux qac NF000148.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM Qac-pB8 family quaternary ammonium compound efflux SMR transporter -STRESS ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS STRESS -VIRULENCE_Cdiff VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -VIRULENCE_Cperf VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -VIRULENCE_Ecoli VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -VIRULENCE_Saur VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -VIRULENCE ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -aac(2')-IIa aac(2') aac(2')-IIa NF000100.2 510.00 510.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KASUGAMYCIN kasugamycin N-acetyltransferase AAC(2')-IIa -aac(2')-IIb aac(2') aac(2')-IIb NF033472.1 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KASUGAMYCIN kasugamycin N-acetyltransferase AAC(2')-IIb -aac(2')-Ia aac(2') aac(2')-Ia NF000108.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ia -aac(2')-Ib aac(2') aac(2')-Ib NF000010.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ib -aac(2')-Ic aac(2') aac(2')-Ic NF000034.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ic -aac(2')-Id aac(2') aac(2')-Id NF000042.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Id -aac(2')-Ie aac(2') aac(2')-Ie NF000054.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ie -aac(2') aac aac(2') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 2'-N-acetyltransferase -aac(3)-IIIa aac(3) aac(3)-IIIa - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 40.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIa -aac(3)-IIIb aac(3) aac(3)-IIIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIb -aac(3)-IIIc aac(3) aac(3)-IIIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIc -aac(3)-IIa aac(3)-II aac(3)-IIa - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIa -aac(3)-IIb aac(3)-II aac(3)-IIb - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIb -aac(3)-IIc aac(3)-II aac(3)-IIc - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIc -aac(3)-IId aac(3)-II aac(3)-IId - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IId -aac(3)-IIe aac(3)-II aac(3)-IIe - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIe -aac(3)-IIg aac(3)-II aac(3)-IIg - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIg -aac(3)-II aac(3) aac(3)-II NF033080.0 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-II family aminoglycoside N-acetyltransferase -aac(3)-IVa aac(3)_IV_fam aac(3)-IVa - 0.00 0.00 98.00 90.00 97.00 99.00 95.00 45.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN/GENTAMICIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(3)-IVa -aac(3)-IVb aac(3)_IV_fam aac(3)-IVb - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN/GENTAMICIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(3)-IVb -aac(3)-IXa aac(3) aac(3)-IXa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-IXa -aac(3)-Ia aac(3)-I aac(3)-Ia - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ia -aac(3)-Ib aac(3)-I aac(3)-Ib - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ib -aac(3)-Ic aac(3)-I aac(3)-Ic - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ic -aac(3)-Id aac(3)-I aac(3)-Id - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Id -aac(3)-If aac(3)-I aac(3)-If - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-If -aac(3)-Ig aac(3)-I aac(3)-Ig - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ig -aac(3)-Ih aac(3)-I aac(3)-Ih - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 1 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ih -aac(3)-Ii aac(3)-I aac(3)-Ii - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ii -aac(3)-I aac(3)_gen aac(3)-I NF033083.0 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-I family aminoglycoside 3-N-acetyltransferase -aac(3)-VIII aac(3) aac(3)-VIII NF033180.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-VIII -aac(3)-VIIa aac(3) aac(3)-VIIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-VIIa -aac(3)-VIa aac(3) aac(3)-VIa NF033612.0 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-VIa -aac(3)-XI aac(3)_gen aac(3)-XI NF000482.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-XI -aac(3)-Xa aac(3) aac(3)-Xa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-Xa -aac(3)_IV_fam aac(3)_gen aac(3)-IV NF033081.0 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-IV family aminoglycoside N-acetyltransferase -aac(3)_gen aac aac(3) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside 3-N-acetyltransferase -aac(3) aac(3)_gen aac(3) NF033082.0 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside 3-N-acetyltransferase -aac(6')-29 aac(6') aac(6')-29 NF000050.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-29 -aac(6')-30 aac(6') aac(6')-30 NF033077.0 255.00 255.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-30 -aac(6')-31 aac(6')-set_A aac(6')-31 NF000118.3 385.00 385.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-31 -aac(6')-35 aac(6') aac(6')-35 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-35 -aac(6')-III aac(6') aac(6')-III NF038102.1 305.00 305.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE TOBRAMYCIN tobramycin N-acetyltransferase AAC(6')-III -aac(6')-IIa aac(6')-II aac(6')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-IIa -aac(6')-IIc aac(6')-II aac(6')-IIc NF000135.2 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-IIc -aac(6')-IId aac(6')-Ib-G aac(6')-IId - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-IId -aac(6')-II aac(6')-set_A aac(6')-II - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN AAC(6')-II family aminoglycoside 6'-N-acetyltransferase -aac(6')-Iad aac(6')-I aac(6')-Iad NF000115.2 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Iad -aac(6')-Iag aac(6') aacA48 NF033130.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-Iag -aac(6')-Iak aac(6')_Steno aac(6')-Iak NF000497.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Iak -aac(6')-Ian aac(6')-I aac(6')-Ian NF000431.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ian -aac(6')-Ia aac(6')_Ia_fam aac(6')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-Ia -aac(6')-Ib'' aac(6')-Ib-KT aac(6')-Ib'' - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ib'' -aac(6')-Ib' aac(6')-Ib-G aac(6')-Ib' - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(6')-Ib' -aac(6')-Ib-AGKT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-AKT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-D181Y aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-G aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-KT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-K aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-W104R aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib-cr aac(6')-Ib aac(6')-Ib-cr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE/QUINOLONE AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr -aac(6')-Ib-generic aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Ib11 aac(6')-Ib-AGKT aac(6')-Ib11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ib11 -aac(6')-Ib aac(6')-set_A aac(6')-Ib NF033074.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase -aac(6')-Id aac(6')-I aac(6')-Id NF033374.6 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Id -aac(6')-Ie2 aac(6')-Ie_fam aac(6')-Ie - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ie -aac(6')-Ie_fam aac(6')-I aac(6')-Ie NF033693.0 340.00 340.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ie family aminoglycoside N-acetyltransferase -aac(6')-Ie aac(6')-Ie_fam aac(6')-Ie NF000507.1 450.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ie -aac(6')-If aac(6')-I aac(6')-If NF000110.2 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-If -aac(6')-Il aac(6')-I aac(6')-Il NF000158.2 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Il -aac(6')-Im aac(6')-I aac(6')-Im NF000016.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Im -aac(6')-Ip aac(6')_Ia_fam aac(6')-Ip NF000486.1 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-Ip -aac(6')-Iq aac(6')_Ia_fam aac(6')-Iq - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-Iq -aac(6')-Iz aac(6')_Steno aac(6')-Iz NF000138.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Iz -aac(6')-I aac(6') aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-I family aminoglycoside 6'-N-acetyltransferase -aac(6')-set_A aac(6') aac(6') NF012165.0 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')-sk aac(6')_Strep aac(6')-kana - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')_Acine aac(6')-I aac(6')-I NF000224.3 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aac(6')_Entco aac(6') aac(6')-I NF000165.3 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')_Ia_fam aac(6') aac(6') NF033078.2 265.00 265.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase -aac(6')_Serra aac(6') aac(6') NF000021.4 310.00 310.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')_Steno aac(6') aac(6') NF033075.0 290.00 290.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')_Strep aac(6') aac(6') NF000225.3 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6')_Yersi aac(6') aac(6') NF033076.0 290.00 290.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aac(6') aac aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside 6'-N-acetyltransferase -aacA-ACI1 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI2 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI3 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI4 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI5 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI6 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ACI7 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase -aacA-ENT1 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-ENT2 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-ENT3 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-ENT4 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-STR-10 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-STR-13 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-STR-15 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA-STR-7 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA10 aac(6')-I aacA10 NF033151.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-I family aminoglycoside 6'-N-acetyltransferase -aacA32 aac(6')-set_A aacA32 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase -aacA34 aac(6') aacA34 NF000123.2 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA34 -aacA37 aac(6') aacA37 NF000152.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA37 -aacA38 aac(6')-set_A aacA38 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA38 -aacA40 aac(6')-II aacA40 NF000048.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA40 -aacA43 aac(6')_Ia_fam aacA43 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase AacA43 -aacA49 aac(6')_Ia_fam aacA49 NF033150.1 410.00 410.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase AacA49 -aacA57-2 aacA57 aacA57-2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Ian -aacA57 aac(6')-Ian aacA57 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ian -aacA8 aac(6')-set_A aacA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA8 -aac AME aac - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase -aad9 ant(9) aad9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase -aadA10 ant(3'')-Ia aadA10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA10 -aadA11 ant(3'')-Ia aadA11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA11 -aadA12 ant(3'')-Ia aadA12 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA12 -aadA13 ant(3'')-Ia aadA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA13 -aadA15 ant(3'')-Ia aadA15 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA15 -aadA16 ant(3'')-Ia aadA16 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16 -aadA1bt aadA1 aadA1bt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1bt -aadA1 ant(3'')-Ia aadA1 NF033126.1 587.00 587.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 -aadA21 ant(3'')-Ia aadA21 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA21 -aadA22 ant(3'')-Ia aadA22 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22 -aadA25 ant(3'')-Ia aadA25 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA25 -aadA27 ant(3'')-II aadA27 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-II family aminoglycoside nucleotidyltransferase AadA27 -aadA2 ant(3'')-Ia aadA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 -aadA31 ant(3'')-Ia aadA31 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 -aadA3 ant(3'')-Ia aadA3 NF033127.1 595.50 595.50 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA3 -aadA4 aadA_4_5 aadA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA4 -aadA5 aadA_4_5 aadA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5 -aadA6 ant(3'')-Ia aadA6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA6 -aadA7 ant(3'')-Ia aadA7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA7 -aadA8 ant(3'')-Ia aadA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA8 -aadA9 ant(3'')-Ia aadA9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA9 -aadA_4_5 ant(3'')-Ia aadA_4_5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA -aadE-Cc ant(6) aadE-Cc NF033221.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadE-Cc -aadE ant(6) aadE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadE -aadK ant(6) aadK NF000312.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadK -aadS_fam ant6_gen aadS NF033387.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN AadS family aminoglycoside 6-adenylyltransferase -aadS aadS_fam aadS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadS -aafA VIRULENCE_Ecoli aafA - 0.00 0.00 76.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II major subunit AafA -aafB VIRULENCE_Ecoli aafB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II minor subunit AafB -aafC VIRULENCE_Ecoli aafC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II usher protein AafC -aafD VIRULENCE_Ecoli aafD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II chaperone AafD -aaiC VIRULENCE_Ecoli aaiC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type VI secretion system protein AaiC/Hcp2 -aap VIRULENCE_Ecoli aap - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE dispersin Aap -aar VIRULENCE_Ecoli aar - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AggR-activated transcriptional regulator Aar -aatA VIRULENCE_Ecoli aatA - 0.00 0.00 86.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE dispersin export ABC transporter outer membrane protein AatA -abaF MFS_efflux abaF - 0.00 0.00 71.00 90.00 90.00 96.00 84.00 25.00 1 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin efflux MFS transporter AbaF -abc-f AMR abc-f NF000355.3 450.00 440.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein -abcf-produ abc-f abc-f NF000171.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE TlrC/CarA/OleB/SrmB family ABC-F type ribosomal protection protein -acr3_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE Acr3 family arsenite efflux transporter -acr3 acr3_gen acr3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter Acr3 -acrF RND-IM acrF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit AcrF -adeC-K-oprM RND-OM adeC - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor -adeC adeC-K-oprM adeC NF033142.1 975.00 975.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter AdeABC outer membrane channel subunit AdeC -adeD RND-peri adeD - 0.00 0.00 86.00 90.00 90.00 96.00 88.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit AdeD -adeE RND-IM adeE - 0.00 0.00 85.00 90.00 90.00 88.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit AdeE -afaC VIRULENCE_Ecoli afaC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AfaC-I/III family usher protein -agg3A VIRULENCE_Ecoli agg3A - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 major subunit Agg3A -agg3B VIRULENCE_Ecoli agg3B - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 minor subunit Agg3B -agg3C VIRULENCE_Ecoli agg3C - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 usher protein Agg3C -agg3D VIRULENCE_Ecoli agg3D - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 chaperone Agg3D -agg4A VIRULENCE_Ecoli agg4A - 0.00 0.00 80.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 4 major subunit Agg4A/HdaA -agg4D VIRULENCE_Ecoli agg4D - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 4 chaperone Agg4D/HdaD -agg5A VIRULENCE_Ecoli agg5A - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria V major subunit Agg5A -aggA VIRULENCE_Ecoli aggA - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I major subunit AggA -aggB VIRULENCE_Ecoli aggB - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I minor subunit AggB -aggC VIRULENCE_Ecoli aggC - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I usher protein AggC -aggD VIRULENCE_Ecoli aggD - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I chaperone AggD -aggR VIRULENCE_Ecoli aggR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence transcriptional regulator AggR -air VIRULENCE_Ecoli air - 0.00 0.00 85.00 80.00 80.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE inverse autotransporter adhesin EaeX/Air -almG AMR almG - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR COLISTIN COLISTIN glycine--lipid A transferase AlmG -alpha-1 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha -alpha-2 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha -alpha-5 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN NU intimin type nu -alpha-6 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ZETA intimin type zeta -alpha-8 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha -alpha eae_typing_E._coli eae NF033639.1 2050.00 2050.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha -amvA MFS_efflux amvA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter AmvA -ant(2'')-Ia ant(2'') ant(2'')-Ia NF000064.3 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(2'')-Ia -ant(2'') ant ant(2'') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN ANT(2'') family aminoglycoside adenylyltransferase -ant(3'')-IIa ant(3'')-II ant(3'')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIa -ant(3'')-IIb ant(3'')-II ant(3'')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIb -ant(3'')-IIc ant(3'')-II ant(3'')-IIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIc -ant(3'')-II ant ant(3'')-II NF033220.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-II family aminoglycoside nucleotidyltransferase -ant(3'')-Ia ant(3'')-I ant(3'')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA -ant(3'')-Ib ant ant(3'')-Ib - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ib -ant(3'')-Ih ant(3'')-I ant(3'')-Ih - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ih -ant(3'')-Ij ant(3'')-I ant(3'')-Ij - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ij -ant(3'')-I ant ant(3'') NF012157.0 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-I family aminoglycoside nucleotidyltransferase -ant(4')-IIa ant(4')-II ant(4')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(4')-IIa -ant(4')-IIb ant(4')-II ant(4')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(4')-IIb -ant(4')-II ant(4') ant(4') NF028535.0 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4')-II family aminoglycoside nucleotidyltransferase -ant(4')-Ia ant(4')-I aadD1 NF000181.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ia -ant(4')-Ib ant(4')-I aadD2 NF000079.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ib -ant(4')-Ic ant(4')-I ant(4')-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ic -ant(4')-I ant(4') ant(4')-I NF033061.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4')-I family aminoglycoside nucleotidyltransferase -ant(4') ant ant(4') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4') family aminoglycoside nucleotidyltransferase -ant(6)-Ia ant(6) ant(6)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ia -ant(6)-Ib ant(6) ant(6)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ib -ant(6)-Ic ant(6) ant(6)-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ic -ant(6) ant6_gen ant(6) NF033084.2 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-nucleotidyltransferase -ant(9)-Ia ant(9) ant(9)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside nucleotidyltransferase ANT(9)-Ia -ant(9)-Ib ant(9) ant(9)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside nucleotidyltransferase ANT(9)-Ib -ant(9) ant ant(9) NF012212.0 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN ANT(9) family aminoglycoside nucleotidyltransferase -ant6_gen ant ant(6) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase -ant AME ant - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside nucleotidyltransferase -aph(2'')-IIIa aph(2'') aph(2'')-IIIa NF000044.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IIIa -aph(2'')-IIa aph(2'') aph(2'')-IIa NF000015.3 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IIa -aph(2'')-IVa aph-Ie-IVa aph(2'')-IVa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IVa -aph(2'')-I_a_f_h aph(2'') aph(2'')-I NF033692.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-Ia/If/Ih family aminoglycoside O-phosphotransferase -aph(2'')-Ia aph(2'')-I_a_f_h aph(2'')-Ia NF000508.1 600.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ia -aph(2'')-Ie aph-Ie-IVa aph(2'')-Ie - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ie -aph(2'')-If2 aph(2'')-I_a_f_h aph(2'')-If2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-If2 -aph(2'')-If_h aph(2'')-I_a_f_h aph(2'')-I NF000498.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-If/Ih family aminoglycoside O-phosphotransferase -aph(2'')-If aph(2'')-If_h aph(2'')-If - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-If -aph(2'')-Ig aph(2'') aph(2'')-Ig NF000132.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ig -aph(2'')-Ih aph(2'')-If_h aph(2'')-Ih - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ih -aph(2'') aph aph(2'') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'') family aminoglycoside O-phosphotransferase -aph(3'')-Ia aph(3'') aph(3'')-Ia NF032894.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ia -aph(3'')-Ib aph(3'') aph(3'')-Ib NF032895.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ib -aph(3'')-Ic aph(3'') aph(3'')-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ic -aph(3'') aph aph(3'') NF032896.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(3'') family aminoglycoside O-phosphotransferase -aph(3')-II-therm aph(3')-II aph(3')-II - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3')-II family aminoglycoside O-phosphotransferase -aph(3')-IIIa aph(3') aph(3')-IIIa NF033064.0 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIIa -aph(3')-IIa aph(3')-II aph(3')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIa -aph(3')-IIb aph(3')-II aph(3')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIb -aph(3')-IIc aph(3')-II aph(3')-IIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIc -aph(3')-IId aph(3')-II aph(3')-IId - 0.00 0.00 88.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IId -aph(3')-II aph(3') aph(3')-II NF032898.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3')-II family aminoglycoside O-phosphotransferase -aph(3')-IVa aph(3') aph(3')-IVa NF033065.0 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IVa -aph(3')-IX aph(3') aph(3')-IX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3') family aminoglycoside O-phosphotransferase -aph(3')-Ia aph(3')-I aph(3')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Ia -aph(3')-Ib aph(3')-I aph(3')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Ib -aph(3')-Id aph(3')-I aph(3')-Id - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Id -aph(3')-I aph(3') aph(3')-I NF033059.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN APH(3')-I family aminoglycoside O-phosphotransferase -aph(3')-VIIIa aph(3')-VIII aph(3')-VIIIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIIa -aph(3')-VIIIb aph(3')-VIII aph(3')-VIIIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIIb -aph(3')-VIII aph(3') aph(3')-VIII NF033066.0 520.00 520.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIII -aph(3')-VIIa aph(3') aph(3')-VIIa NF033067.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIa -aph(3')-VIa aph(3')-VI aph(3')-VIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIa -aph(3')-VIb aph(3')-VI aph(3')-VIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIb -aph(3')-VI aph(3') aph(3')-VI NF033062.0 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN APH(3')-VI family aminoglycoside O-phosphotransferase -aph(3')-Va aph(3')-V aph(3')-Va - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Va -aph(3')-Vb aph(3')-V aph(3')-Vb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Vb -aph(3')-Vc aph(3')-V aph(3')-Vc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Vc -aph(3')-V aph(3') aph(3')-V NF032897.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(3')-V family aminoglycoside O-phosphotransferase -aph(3')-XV aph(3') aph(3')-XV NF033063.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-XV -aph(3') aph aph(3') NF033068.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(3') family aminoglycoside O-phosphotransferase -aph(4)-Ia aph(4)-I aph(4)-Ia NF000107.2 725.00 725.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN aminoglycoside O-phosphotransferase APH(4)-Ia -aph(4)-I aph aph(4)-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN APH(4)-I family aminoglycoside O-phosphotransferase -aph(6)-Ia aph(6)-I aph(6)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ia -aph(6)-Ib aph(6)-I aph(6)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ib -aph(6)-Ic_gen aph(6)-I aph(6)-I NF033614.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(6)-I family aminoglycoside O-phosphotransferase -aph(6)-Ic aph(6)-Ic_gen aph(6)-Ic NF000011.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ic -aph(6)-Id aph(6)-I aph(6)-Id - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Id -aph(6)-I aph aph(6)-I NF012171.0 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(6)-I family aminoglycoside O-phosphotransferase -aph(6)-Smalt aph(6)-I aph(6) NF012160.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(6) family putative aminoglycoside O-phosphotransferase -aph(7'')-Ia aph aph(7'')-Ia NF000137.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN aminoglycoside O-phosphotransferase APH(7'')-Ia -aph(9)-Ia aph(9)-I aph(9)-Ia NF000052.4 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside O-phosphotransferase APH(9)-Ia -aph(9)-Ib aph(9)-I aph(9)-Ib NF000029.2 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside O-phosphotransferase APH(9)-Ib -aph(9)-I aph aph(9)-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN APH(9)-I family aminoglycoside O-phosphotransferase -aph-Ie-IVa aph(2'') aph(2'') NF000076.3 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-Ie/IVa family aminoglycoside O-phosphotransferase -aphA16 aph(3') aphA16 NF033112.0 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN APH(3') family aminoglycoside O-phosphotransferase AphA16 -aph AME aph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase -apmA AMR apmA NF000084.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN aminocyclitol acetyltransferase ApmA -ariR ACID ymgB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS ACID biofilm/acid-resistance regulator AriR -armA rmt armA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase -arr-2b arr arr NF000066.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase -arr-3 arr arr-3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-3 -arr-6 arr arr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-6 -arr-Msmeg arr arr NF000318.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-2b -arr AMR arr NF033144.1 130.00 130.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase -arsA METAL arsA - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter ATPase subunit ArsA -arsB_Lm acr3_gen arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsB_R773 arsB arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsB_pI258 arsB arsB NF033877.0 760.00 760.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsB_pKW301 arsB arsB - 0.00 0.00 96.00 90.00 90.00 98.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsB_pYV arsB arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsB METAL arsB - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB -arsC_gluta METAL arsC NF007456.1 242.00 242.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENATE glutaredoxin-dependent arsenate reductase -arsC_thio METAL arsC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENATE thioredoxin-dependent arsenate reductase -arsD_like METAL arsD2 - 0.00 0.00 70.00 90.00 90.00 80.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter metallochaperone ArsD-related protein -arsD METAL arsD NF033727.1 95.00 95.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter metallochaperone ArsD -arsH METAL arsH - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC arsenic resistance NADPH-dependent reductase ArsH -arsN1a arsN_gen arsN1 NF040503.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsinothricin resistance N-acetyltransferase ArsN1 family A -arsN1b arsN_gen arsN1 NF040504.1 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsinothricin resistance N-acetyltransferase ArsN1 family B -arsN2 arsN_gen arsN2 NF040501.1 125.00 125.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsenic resistance N-acetyltransferase ArsN2 -arsN_gen METAL arsN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC ArsN family N-acetyltransferase -arsP METAL arsP - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ORGANOARSENIC organoarsenical efflux permease ArsP -arsR_K-12 arsR arsR - 0.00 0.00 87.00 90.00 90.00 95.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_LGI2_1 arsR arsR - 0.00 0.00 87.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_LGI2_2 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_R46 arsR arsR - 0.00 0.00 88.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_Tn7102 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_pI258 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_pKW301 arsR_R46 arsR - 0.00 0.00 88.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_pSX267 arsR arsR - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR_pYV arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR -arsR HTH_5 arsR - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR -asr ACID asr NF033636.1 50.00 40.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS ACID acid resistance repetitive basic protein Asr -astA VIRULENCE_Ecoli astA NF033646.1 80.00 80.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin EAST1 -aur VIRULENCE_Saur aur - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE zinc metalloproteinase aureolysin -auto_tox VIRULENCE_Ecoli - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE SPATE family serine protease autotransporter -bcrA_Lm AMR bcrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BACITRACIN BACITRACIN bacitracin resistance ABC transporter ATP-binding subunit BcrA -becA VIRULENCE_Cperf becA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin enzymatic subunit BecA -becB VIRULENCE_Cperf becB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin binding subunit BecB -bepC RND-OM bepC - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane subunit BepC -bepD RND-peri bepD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit BepD -bepE RND-IM bepE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit BepE -bepF RND-peri bepF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit BepF -bepG RND-IM bepG - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit BepG -beta-1 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta -beta-2 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta -beta-4 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN KAPPA intimin type kappa -beta eae_typing_E._coli eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta -bexA MATE_efflux bexA - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MATE transporter BexA -bfpA pilus bfpA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bundle-forming pilus major subunit BfpA -bin_CdtA VIRULENCE_Cdiff cdtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin enzymatic subunit CdtA -bin_CdtB VIRULENCE_Cdiff cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin binding subunit CdtB -bind_CopB multi_Cu_ox copB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER copper-binding protein CopB -bla-A2 bla-A bla NF012099.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase, subclass A2 -bla-A_Chryseo bla-A2 bla-A NF000447.2 510.00 510.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CGA/CIA family class A beta-lactamase -bla-A_carba bla-A bla NF000538.0 410.00 410.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM carbapenem-hydrolyzing class A beta-lactamase -bla-A_firm bla-A bla NF012167.0 427.00 427.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -bla-A bla bla NF033103.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -bla-B1-FLAV blaB-IND-MUS bla-B1-FLAV NF000450.2 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B1 metallo-beta-lactamase -bla-B1 bla-B bla NF033088.2 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B1 metallo-beta-lactamase -bla-B2 bla-B bla NF033087.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B2 metallo-beta-lactamase -bla-B3-CAR bla-B blaCAR NF000469.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAR family subclass B3 metallo-beta-lactamase -bla-B3 bla-B bla NF033105.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B3 metallo-beta-lactamase -bla-B bla bla NF012229.1 100.00 100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM metallo-beta-lactamase -bla-C bla ampC NF033085.1 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class C beta-lactamase -bla-D-Gpos blaOXA blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BPU/BAT/BSU family class D beta-lactamase -bla-D bla blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase -bla1 bla-A_firm bla NF033096.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase Bla1 -bla2a bla-A bla2a NF033099.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM Exo family class A beta-lactamase -blaAAK blaSHV-LEN blaAAK NF038195.1 655.00 655.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AAK family class A beta-lactamase -blaACC bla-C blaACC NF000397.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACC family cephalosporin-hydrolyzing class C beta-lactamase -blaACI bla-A blaACI NF000448.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACI family class A beta-lactamase -blaACT CMY2-MIR-ACT-EC blaACT NF000385.4 810.00 810.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACT family cephalosporin-hydrolyzing class C beta-lactamase -blaADC-8_fam bla-C blaADC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ADC-like cephalosporin-hydrolyzing class C beta-lactamase -blaADC bla-C blaADC NF000425.2 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ADC family extended-spectrum class C beta-lactamase -blaAER bla-A blaAER - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AER family class A beta-lactamase -blaAFM bla-B1 blaAFM NF033736.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AFM family subclass B1 metallo-beta-lactamase -blaAIM bla-B3 blaAIM NF000439.2 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AIM family subclass B3 metallo-beta-lactamase -blaALG11 bla-B3 blaALG11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALG11 family subclass B3 metallo-beta-lactamase -blaALG6 bla-B3 blaALG6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALG6 family subclass B3 metallo-beta-lactamase -blaALI bla-B1 blaALI NF033582.2 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALI family subclass B1 metallo-beta-lactamase -blaANA bla-B1 blaANA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ANA family subclass B1 metallo-beta-lactamase -blaAQU blaCMY-FOX blaAQU NF033467.0 815.00 815.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AQU family class C beta-lactamase -blaARL bla-A blaARL NF033386.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ARL family class A beta-lactamase -blaAST bla-A blaAST - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AST family class A beta-lactamase -blaASU1 bla-A blaASU1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ASU1 family class A beta-lactamase -blaAXC bla-A blaAXC NF033929.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AXC family carbapenem-hydrolyzing class A beta-lactamase -blaA_Mtub bla-A blaA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaA -blaA_Yent bla-A blaA NF033152.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaA -blaB-IND-MUS bla-B1 bla NF012146.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaB/IND/MUS family subclass B1 metallo-beta-lactamase -blaB3SU1 bla-B3 blaB3SU1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM B3SU1 family subclass B3 metallo-beta-lactamase -blaB3SU2 bla-B3 blaB3SU2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM B3SU2 family subclass B3 metallo-beta-lactamase -blaBAT bla-D-Gpos blaBAT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BAT family class D beta-lactamase -blaBBI bla-A_firm blaBBI NF033714.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BBI family class A beta-lactamase -blaBCL bla-A_firm blaBCL NF033060.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BCL family class A beta-lactamase -blaBEL bla-A blaBEL NF000398.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN BEL family class A extended-spectrum beta-lactamase -blaBES bla-A blaBES NF000451.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN BES family class A beta-lactamase -blaBIC bla-A_carba blaBIC NF000449.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BIC family carbapenem-hydrolyzing class A beta-lactamase -blaBJP bla-B3 blaBJP NF012140.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BJP family subclass B3 metallo-beta-lactamase -blaBKC_GPC bla-A bla NF033626.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BKC/GPC family carbapenem-hydrolyzing class A beta-lactamase -blaBKC blaBKC_GPC blaBKC NF000413.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BKC family carbapenem-hydrolyzing class A beta-lactamase -blaBPU bla-D-Gpos blaBPU NF012098.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BPU family class D beta-lactamase -blaBRO bla-A blaBRO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BRO family class A beta-lactamase -blaBSU bla-D-Gpos blaBSU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BSU family class D beta-lactamase -blaBUT CMY2-MIR-ACT-EC blaBUT NF038238.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BUT family class C beta-lactamase -blaB blaB-IND-MUS blaB NF033107.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BlaB family subclass B1 metallo-beta-lactamase -blaCAM blaB-IND-MUS blaCAM NF033895.1 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAM family subclass B1 metallo-beta-lactamase -blaCARB_gen bla-A blaCARB NF000481.1 430.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CARB/PSE/RTG family carbenicillin-hydrolyzing class A beta-lactamase -blaCARB blaCARB_gen blaCARB NF000188.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CARB family carbenicillin-hydrolyzing class A beta-lactamase -blaCAU/MBL1b bla-B3 blaCAU NF000427.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAU/MBL1b family subclass B3 metallo-beta-lactamase -blaCBP bla-A blaCBP NF000517.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CBP family penicillin-hydrolyzing class A beta-lactamase -blaCDD bla-D blaCDD NF033866.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CDD family class D beta-lactamase -blaCFE blaCMY blaCFE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-2 family cephalosporin-hydrolyzing class C beta-lactamase -blaCGA bla-A_Chryseo blaCGA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CGA family class A extended-spectrum beta-lactamase -blaCIA bla-A_Chryseo blaCIA NF000446.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CIA family class A extended-spectrum beta-lactamase -blaCKO bla-A blaCKO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MAL/CKO family class A beta-lactamase -blaCMA blaCrA blaCMA NF033700.1 887.00 887.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOTHIN CMA family class C beta-lactamase -blaCME bla-A2 blaCME NF000511.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CME family class A extended-spectrum beta-lactamase -blaCMH blaACT blaCMH NF000419.2 875.00 875.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CMH family class C beta-lactamase -blaCMY-FOX bla-C ampC NF012172.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FOX/MOX family class C beta-lactamase -blaCMY CMY2-MIR-ACT-EC blaCMY NF000191.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-2 family class C beta-lactamase -blaCPS bla-B3 blaCPS NF000454.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CPS family subclass B3 metallo-beta-lactamase -blaCRD3 bla-B3 blaCRD3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRD3 family subclass B3 metallo-beta-lactamase -blaCRH bla-A_carba blaCRH NF033211.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRH family carbapenem-hydrolyzing class A beta-lactamase -blaCRP bla-A_carba blaCRP NF040548.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRP family carbapenem-hydrolyzing class A beta-lactamase -blaCSA blaCrA blaCSA NF033698.1 884.00 884.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOTHIN CSA family class C beta-lactamase -blaCSP bla-A2 blaCSP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CSP family class A beta-lactamase -blaCTX-M-151_fam bla-A blaCTX-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CTX-M-151 family class A beta-lactamase -blaCTX-M bla-A blaCTX-M NF033089.1 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CTX-M family class A extended-spectrum beta-lactamase -blaCVI bla-B2 blaCVI NF038046.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CVI family subclass B2 metallo-beta-lactamase -blaCrA bla-C ampC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CrA family class C beta-lactamase -blaDES bla-A blaDES - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM DES family class A beta-lactamase -blaDHA bla-C blaDHA NF012102.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN DHA family class C beta-lactamase -blaDHT2 bla-B3 blaDHT2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DHT2 family subclass B3 metallo-beta-lactamase -blaDIM-SIM-IMP bla-B1 blaDIM NF012145.1 288.00 288.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DIM/SIM/IMP family subclass B1 metallo-beta-lactamase -blaDIM blaDIM-SIM-IMP blaDIM NF000445.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DIM family subclass B1 metallo-beta-lactamase -blaEAM bla-B3 blaEAM NF040470.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN EAM family subclass B3 metallo-beta-lactamase -blaEBR blaB-IND-MUS blaEBR NF000444.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM EBR family subclass B1 metallo-beta-lactamase -blaECM bla-B3 blaECM NF040468.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ECM family subclass B3 metallo-beta-lactamase -blaECV bla-B1 blaECV - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ECV family subclass B1 metallo-beta-lactamase -blaEC CMY2-MIR-ACT-EC blaEC NF000185.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR BETA-LACTAM BETA-LACTAM BlaEC family class C beta-lactamase -blaEFM bla-B3 blaEFM NF040469.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM EFM family subclass B3 metallo-beta-lactamase -blaELM bla-B3 blaELM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ELM family subclass B3 metallo-beta-lactamase -blaERP bla-A blaERP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ERP family class A beta-lactamase -blaESP bla-B3 blaESP NF000455.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ESP-1 family subclass B3 metallo-beta-lactamase -blaEVM bla-B3 blaEVM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN EVM family subclass B3 metallo-beta-lactamase -blaE bla-C blaE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class C beta-lactamase -blaFAR bla-A blaFAR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FAR family class A beta-lactamase -blaFEZ bla-B3 blaFEZ NF000216.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FEZ family subclass B3 metallo-beta-lactamase -blaFIA bla-B1 blaFIA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FIA family subclass B1 metallo-beta-lactamase -blaFIM bla-B1 blaFIM NF000437.2 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FIM family subclass B1 metallo-beta-lactamase -blaFONA bla-A blaFONA NF000323.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FONA family class A beta-lactamase -blaFOX blaCMY-FOX blaFOX NF000399.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN FOX family cephalosporin-hydrolyzing class C beta-lactamase -blaFPH bla-A blaFPH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FPH family carbapenem-hydrolyzing class A beta-lactamase -blaFRI bla-A_carba blaFRI NF000428.4 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FRI family carbapenem-hydrolyzing class A beta-lactamase -blaFTU bla-A blaFTU NF000513.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FTU family class A beta-lactamase -blaF bla-A blaF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -blaGES bla-A blaGES NF012103.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN GES family class A beta-lactamase -blaGIL bla-A blaGIL NF000505.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM GIL family class A beta-lactamase -blaGIM blaDIM-SIM-IMP blaGIM NF000396.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GIM family subclass B1 metallo-beta-lactamase -blaGMB bla-B1 blaGMB NF038103.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GMB family subclass B1 metallo-beta-lactamase -blaGOB bla-B3 blaGOB NF012101.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GOB family subclass B3 metallo-beta-lactamase -blaGPC blaBKC_GPC blaGPC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GPC family carbapenem-hydrolyzing class A beta-lactamase -blaGRD23 blaDIM-SIM-IMP blaGRD23 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GRD23 family subclass B1 metallo-beta-lactamase -blaGRD33 bla-B3 blaGRD33 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GRD33 family subclass B3 metallo-beta-lactamase -blaHER bla-A blaHER - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM HER family class A beta-lactamase -blaHMB blaKHM-HMB blaHMB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM HMB family subclass B1 metallo-beta-lactamase -blaIDC bla-C blaIDC NF038069.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM IDC family class C beta-lactamase -blaIMI bla-A_carba blaIMI NF000400.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IMI family carbapenem-hydrolyzing class A beta-lactamase -blaIMP blaDIM-SIM-IMP blaIMP NF012147.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IMP family subclass B1 metallo-beta-lactamase -blaIND blaB-IND-MUS blaIND NF012149.0 430.00 430.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IND family subclass B1 metallo-beta-lactamase -blaI_gen AMR blaI - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactamase repressor -blaI_of_Z blaI_gen blaI NF000186.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM penicillinase repressor BlaI -blaJOHN bla-B1-FLAV blaJOHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM JOHN family subclass B1 metallo-beta-lactamase -blaKHM-HMB blaDIM-SIM-IMP blaKHM-HMB NF012148.0 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KHM/HMB family subclass B1 metallo-beta-lactamase -blaKHM blaKHM-HMB blaKHM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KHM family subclass B1 metallo-beta-lactamase -blaKLUC blaCTX-M blaKLUC NF000452.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN KLUC family class A extended-spectrum beta-lactamase -blaKPC bla-A_carba blaKPC NF012141.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KPC family carbapenem-hydrolyzing class A beta-lactamase -blaL1 bla-B3 blaL1 NF033106.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM L1 family subclass B3 metallo-beta-lactamase -blaL2 bla-A blaL2 NF000232.1 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM L2 family class A beta-lactamase -blaLAP bla-A blaLAP NF000383.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LAP family class A beta-lactamase -blaLAQ CMY2-MIR-ACT-EC blaLAQ NF040478.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LAQ family class C beta-lactamase -blaLAT blaCMY blaLAT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase -blaLCR_NPS blaOXA blaLCR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LCR/NPS family class D beta-lactamase -blaLCR blaLCR_NPS blaLCR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LCR family class D beta-lactamase -blaLEN blaSHV-LEN blaLEN NF000233.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LEN family class A beta-lactamase -blaLHK bla-C blaLHK NF033569.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LHK family class C beta-lactamase -blaLMB bla-B3 blaLMB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM LMB family subclass B3 metallo-beta-lactamase -blaLRA-10_fam bla-C blaLRA10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA10 family class C beta-lactamase -blaLRA-12_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA12 family subclass B3 metallo-beta-lactamase -blaLRA-12 blaLRA-12_fam blaLRA12 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA12 family subclass B3 metallo-beta-lactamase -blaLRA-13 bla-C blaLRA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA13 family bifunctional class D/class C beta-lactamase -blaLRA-17 blaLRA-12_fam blaLRA17 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA17 family subclass B3 metallo-beta-lactamase -blaLRA-18_fam bla-C blaLRA18 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA18 family class C beta-lactamase -blaLRA-19 blaLRA-12_fam blaLRA19 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA19 family subclass B3 metallo-beta-lactamase -blaLRA-1 bla-A blaLRA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA1 family class A beta-lactamase -blaLRA-2_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA2 family subclass B3 metallo-beta-lactamase -blaLRA-2 blaLRA-2_fam blaLRA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA2 family subclass B3 metallo-beta-lactamase -blaLRA-3_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA3 family subclass B3 metallo-beta-lactamase -blaLRA-3 blaLRA-3_fam blaLRA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA3 family subclass B3 metallo-beta-lactamase -blaLRA-5 bla-A blaLRA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA5 family class A beta-lactamase -blaLRA-7 blaLRA-3_fam blaLRA7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA7 family subclass B3 metallo-beta-lactamase -blaLRA-8 blaLRA-2_fam blaLRA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA8 family subclass B3 metallo-beta-lactamase -blaLRA-9 blaLRA-3_fam blaLRA9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA9 family subclass B3 metallo-beta-lactamase -blaLRG bla-A blaLRG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN LRG family class A beta-lactamase -blaLUS bla-A2 blaLUS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LUS family class A beta-lactamase -blaLUT bla-A blaLUT NF000324.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN LUT family class A beta-lactamase -blaL bla-A blaL NF033101.0 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaL family class A beta-lactamase -blaM-1 blaM blaM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -blaMCA bla-C blaMCA NF033406.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MCA family class C beta-lactamase -blaMIR blaACT blaMIR NF000187.3 882.00 882.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN MIR family cephalosporin-hydrolyzing class C beta-lactamase -blaMOC blaMUS-TUS-MOC blaMOC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM XUS family subclass B1 metallo-beta-lactamase -blaMOX blaCMY-FOX blaMOX NF000239.3 770.00 770.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-1/MOX family class C beta-lactamase -blaMSI-1_fam bla-B3 blaMSI NF000456.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MSI-1 family subclass B3 metallo-beta-lactamase -blaMUS-TUS-MOC blaB-IND-MUS bla NF012137.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MUS/TUS/MOC family subclass B1 metallo-beta-lactamase -blaMUS blaMUS-TUS-MOC blaMUS NF000441.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MUS family subclass B1 metallo-beta-lactamase -blaMYO bla-B1 blaMYO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MYO family subclass B1 metallo-beta-lactamase -blaMYX bla-B1 blaMYX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MYX family subclass B1 metallo-beta-lactamase -blaM bla-A blaM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -blaNDM bla-B1 blaNDM NF000259.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM NDM family subclass B1 metallo-beta-lactamase -blaNPS blaLCR_NPS blaNPS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM NPS family class D beta-lactamase -blaOCH bla-C blaOCH NF000264.2 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN OCH family class C extended-spectrum beta-lactamase -blaOHIO blaSHV-LEN blaOHIO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN OHIO family class A beta-lactamase -blaOKP-A blaOKP blaOKP-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-A family class A broad-spectrum beta-lactamase -blaOKP-B blaOKP blaOKP-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-B family class A broad-spectrum beta-lactamase -blaOKP-C blaSHV-LEN blaOKP-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-C family class A broad-spectrum beta-lactamase -blaOKP-D blaSHV-LEN blaOKP-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-D family class A broad-spectrum beta-lactamase -blaOKP blaSHV-LEN blaOKP NF000265.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP family class A broad-spectrum beta-lactamase -blaORN blaPLA-ORN-TER blaORN NF038401.1 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ORN family class A beta-lactamase -blaORR bla-B1 blaORR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ORR family subclass B1 metallo-beta-lactamase -blaOXA-1036_fam blaOXA blaOXA NF040529.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-1036 family class D beta-lactamase -blaOXA-10_fam blaOXA blaOXA NF000386.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-10 family class D beta-lactamase -blaOXA-114_fam blaOXA-PR blaOXA NF033818.0 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-114 family class D beta-lactamase -blaOXA-12_fam blaOXA-PR blaOXA NF033702.0 595.00 595.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-12 family class D beta-lactamase -blaOXA-134_fam blaOXA blaOXA NF000436.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-134 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-143_fam blaOXA blaOXA NF000464.2 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-143 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-184_fam blaOXA_Campy blaOXA NF000461.2 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-184 family class D beta-lactamase -blaOXA-1_fam blaOXA blaOXA NF000388.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-1 family class D beta-lactamase -blaOXA-211_fam blaOXA blaOXA NF000417.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-211 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-213_fam blaOXA blaOXA NF000269.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-213 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-214_fam blaOXA blaOXA NF000418.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-214 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-229_fam blaOXA blaOXA NF000501.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-229 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-22_fam blaOXA-PR blaOXA NF033509.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-22 family class D beta-lactamase -blaOXA-23_fam blaOXA blaOXA NF000266.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-23 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-24_fam blaOXA blaOXA NF000434.2 615.00 615.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-24 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-266_fam blaOXA blaOXA NF033653.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-266 family class D beta-lactamase -blaOXA-274_fam blaOXA blaOXA NF033648.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-274 family class D beta-lactamase -blaOXA-286_fam blaOXA blaOXA NF000520.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-286 family class D beta-lactamase -blaOXA-294_fam blaOXA blaOXA NF038386.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-294 family class D beta-lactamase -blaOXA-2_fam blaOXA blaOXA NF000267.2 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-2 family class D beta-lactamase -blaOXA-364_fam blaOXA-PR blaOXA NF033815.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-364 family class D beta-lactamase -blaOXA-372_fam blaOXA blaOXA NF000415.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-372 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-427_fam blaOXA-PR blaOXA NF038217.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-427 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-42_fam blaOXA-PR blaOXA NF040531.1 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-42 family class D beta-lactamase -blaOXA-46_fam blaOXA blaOXA NF033104.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-46 family oxacillin-hydrolyzing class D beta-lactamase -blaOXA-48_fam blaOXA blaOXA NF000387.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-48 family class D beta-lactamase -blaOXA-493_fam blaOXA_Campy blaOXA NF000462.2 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-493 family class D beta-lactamase -blaOXA-50_fam blaOXA blaOXA NF000432.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-50 family oxacillin-hydrolyzing class D beta-lactamase -blaOXA-51_fam blaOXA blaOXA NF000268.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-51 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-542_fam blaOXA blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-542 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-548_fam blaOXA blaOXA NF040530.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-548 family class D beta-lactamase -blaOXA-55_fam blaOXA blaOXA NF033667.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-55 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-576_fam blaOXA_Campy blaOXA NF033613.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-576 family class D beta-lactamase -blaOXA-58_fam blaOXA blaOXA NF000500.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-58 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-5_fam blaOXA blaOXA NF040527.1 585.00 585.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-5 family class D beta-lactamase -blaOXA-60_fam blaOXA blaOXA NF000395.3 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-60 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-61_fam blaOXA_Campy blaOXA NF000435.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-61 family class D beta-lactamase -blaOXA-62_fam blaOXA blaOXA NF000430.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-62 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-63_fam blaOXA blaOXA NF000429.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-63 family oxacillin-hydrolyzing class D beta-lactamase -blaOXA-679_fam blaOXA blaOXA NF038333.1 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-679 family carbapenem-hydrolyzing class D beta-lactamase -blaOXA-727_fam blaOXA blaOXA NF033666.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-727 family class D beta-lactamase -blaOXA-85_fam blaOXA blaOXA NF000502.2 550.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-85 family oxacillin-hydrolyzing class D beta-lactamase -blaOXA-919_fam blaOXA-PR blaOXA NF038183.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-919 family class D beta-lactamase -blaOXA-9_fam blaOXA-PR blaOXA NF040532.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-9 family class D beta-lactamase -blaOXA-PR bla-D blaOXA NF000270.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase -blaOXA_Campy blaOXA blaOXA NF000463.2 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase -blaOXA bla-D blaOXA NF012161.0 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase -blaOXY-1 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-1 family class A extended-spectrum beta-lactamase -blaOXY-2 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-2 family class A extended-spectrum beta-lactamase -blaOXY-3 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-3 family class A extended-spectrum beta-lactamase -blaOXY-4 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-4 family class A extended-spectrum beta-lactamase -blaOXY-5 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-5 family class A extended-spectrum beta-lactamase -blaOXY-6 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-6 family class A extended-spectrum beta-lactamase -blaOXY bla-A blaOXY NF000271.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY family class A extended-spectrum beta-lactamase -blaPAC bla-C blaPAC NF033159.0 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PAC family class C beta-lactamase -blaPAD bla-A blaPAD NF040472.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PAD family carbapenem-hydrolyzing class A beta-lactamase -blaPAM bla-B3 blaPAM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BETA-LACTAM CARBAPENEM PAM family subclass B3 metallo-beta-lactamase -blaPAU bla-A blaPAU NF033867.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PAU family class A beta-lactamase -blaPDC_gen bla-C blaPDC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC family class C beta-lactamase -blaPDC_var blaPDC_gen blaPDC NF000519.2 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC variant family class C beta-lactamase -blaPDC blaPDC_gen blaPDC NF000422.6 865.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC family class C beta-lactamase -blaPEDO-1_fam bla-B3 blaB3PEDO NF000457.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-1 family subclass B3 metallo-beta-lactamase -blaPEDO-2_fam bla-B3 blaB3PEDO NF000458.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-2 family subclass B3 metallo-beta-lactamase -blaPEDO-3_fam blaB-IND-MUS blaB1PEDO NF000453.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-3 family subclass B1 metallo-beta-lactamase -blaPER bla-A2 blaPER NF000389.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PER family class A extended-spectrum beta-lactamase -blaPFM blaSFH_gen blaPFM NF038003.1 555.00 555.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PFM family subclass B2 metallo-beta-lactamase -blaPLA-ORN-TER bla-A bla NF000275.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PLA/ORN/TER family class A beta-lactamase -blaPLA blaPLA-ORN-TER blaPLA NF038398.1 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PLA family class A beta-lactamase -blaPLN bla-B3 blaPLN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PLN family subclass B3 metallo-beta-lactamase -blaPME bla-A blaPME NF000414.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PME family class A beta-lactamase -blaPNGM bla-B blaPNGM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PNGM family subclass B3-like metallo-beta-lactamase -blaPOM bla-B3 blaPOM NF000438.2 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM POM family subclass B3 metallo-beta-lactamase -blaPSE blaCARB_gen blaPSE NF000480.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PSE family carbenicillin-hydrolyzing class A beta-lactamase -blaPST blaDIM-SIM-IMP blaPST NF033584.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PST family subclass B1 metallo-beta-lactamase -blaPSV bla-A blaPSV NF033174.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PSV family class A beta-lactamase -blaP bla-A_firm blaP NF012156.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaP -blaR1-2 blaR1 blaR1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactam sensor/signal transducer BlaR1 -blaR1_gen AMR blaR1 NF000326.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaR1 family beta-lactam sensor/signal transducer -blaR1 blaR1_gen blaR1 NF033108.1 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactam sensor/signal transducer BlaR1 -blaR39 bla-A blaR39 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -blaRAA bla-A2 blaRAA NF040467.1 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RAA family extended-spectrum beta-lactamase -blaRAHN bla-A blaRAHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RAHN family class A beta-lactamase -blaRCP bla-A blaRCP NF033466.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RCP family class A beta-lactamase -blaRHO bla-C blaRHO NF033575.1 825.00 825.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RHO family class C beta-lactamase -blaROB bla-A blaROB NF033568.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ROB family class A beta-lactamase -blaRSA1 bla-A blaRSA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RSA1 family class A beta-lactamase -blaRSA2 bla-A blaRSA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM RSA2 family carbapenem-hydrolyzing class A beta-lactamase -blaRSC1 bla-C blaRSC1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RSC1 family class C beta-lactamase -blaRSD1 blaOXA blaRSD1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RSD1 family class D beta-lactamase -blaRSD2 blaOXA blaRSD2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RSD2 family class D beta-lactamase -blaRTG blaCARB_gen blaRTG NF000284.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RTG family carbenicillin-hydrolyzing class A beta-lactamase -blaRUB bla-A blaRUB NF033204.1 635.00 635.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RUB family class A broad-spectrum beta-lactamase -blaRm3 bla-B3 blaRm3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B3 metallo-beta-lactamase Rm3 -blaSCO bla-A blaSCO NF000327.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SCO family class A beta-lactamase -blaSED bla-A blaSED NF000328.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SED family class A beta-lactamase -blaSFC bla-A_carba blaSFC NF040547.1 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SFC family carbapenem-hydrolyzing class A beta-lactamase -blaSFDC CMY2-MIR-ACT-EC blaSFDC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN SFDC family class C beta-lactamase -blaSFH_gen bla-B2 bla NF012225.0 440.00 440.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SFH-related subclass B2 metallo-beta-lactamase -blaSFH blaSFH_gen blaSFH NF012224.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SFH family subclass B2 metallo-beta-lactamase -blaSGM bla-A blaSGM NF000512.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SGM family class A beta-lactamase -blaSHN bla-B1 blaSHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SHN family subclass B1 metallo-beta-lactamase -blaSHV-LEN bla-A blaSHV NF012143.0 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHV/LEN/OKP family class A beta-lactamase -blaSHV blaSHV-LEN blaSHV NF000285.3 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHV family class A beta-lactamase -blaSHW blaDIM-SIM-IMP blaSHW - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHW family subclass B1 metallo-beta-lactamase -blaSIM blaDIM-SIM-IMP blaSIM NF000426.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SIM family subclass B1 metallo-beta-lactamase -blaSMB bla-B3 blaSMB NF000287.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SMB-1 family subclass B3 metallo-beta-lactamase -blaSME bla-A_carba blaSME NF012142.0 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SME family carbapenem-hydrolyzing class A beta-lactamase -blaSPG-1_fam bla-B3 blaSPG NF000459.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPG-1 family subclass B3 metallo-beta-lactamase -blaSPM bla-B1 blaSPM NF012150.3 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPM family subclass B1 metallo-beta-lactamase -blaSPN79 bla-B1 blaSPN79 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPN79 family subclass B1 metallo-beta-lactamase -blaSPR HARLDQ_not_B3 blaSPR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SPR family putative metallo-beta-lactamase -blaSPS bla-B1 blaSPS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPS family subclass B1 metallo-beta-lactamase -blaSRT bla-C blaSRT NF000423.2 860.00 860.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN SRT/SST family class C beta-lactamase -blaSTA bla-B1 blaSTA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM STA family subclass B1 metallo-beta-lactamase -blaS bla-A blaS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -blaTEM bla-A blaTEM NF000531.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TEM family class A beta-lactamase -blaTER blaPLA-ORN-TER blaTER NF038400.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TER family class A beta-lactamase -blaTHIN-B blaTHIN blaTHIN-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B3 metallo-beta-lactamase THIN-B -blaTHIN bla-B3 blaTHIN NF000440.2 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM THIN family subclass B3 metallo-beta-lactamase -blaTLA2 bla-A2 tla2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TLA2 family class A extended-spectrum beta-lactamase -blaTLA bla-A2 blaTLA NF000298.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TLA family class A extended-spectrum beta-lactamase -blaTMB blaDIM-SIM-IMP blaTMB NF000443.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TMB family subclass B1 metallo-beta-lactamase -blaTRU blaCMY-FOX blaTRU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TRU family class C beta-lactamase -blaTTU blaDIM-SIM-IMP blaTTU NF033585.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TTU family subclass B1 metallo-beta-lactamase -blaTUS blaMUS-TUS-MOC blaTUS NF000442.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TUS family subclass B1 metallo-beta-lactamase -blaVAM bla-B1 blaVAM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BETA-LACTAM CARBAPENEM VAM family subclass B1 metallo-beta-lactamase -blaVCC bla-A_carba blaVCC NF000518.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VCC family carbapenem-hydrolyzing class A beta-lactamase -blaVEB bla-A2 blaVEB NF000390.2 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN VEB family class A extended-spectrum beta-lactamase -blaVHH blaCARB_gen blaVHH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM VHH family class A beta-lactamase -blaVHW blaCARB_gen blaVHW - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM VHW family class A beta-lactamase -blaVIM bla-B1 blaVIM NF012100.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VIM family subclass B1 metallo-beta-lactamase -blaVMB bla-B1 blaVMB NF038184.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VMB family subclass B1 metallo-beta-lactamase -blaYEM bla-B2 blaYEM NF038166.1 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM YEM family subclass B2 metallo-beta-lactamase -blaYRC CMY2-MIR-ACT-EC blaYRC NF038089.1 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN YRC family class C beta-lactamase -blaZ-mecC blaZ_gen blaZ NF033140.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM mecC-type penicillin-hydrolyzing class A beta-lactamase BlaZ -blaZOG bla-B1 blaZOG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ZOG family subclass B1 metallo-beta-lactamase -blaZ_gen bla-A bla NF033141.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaZ-like penicillin-hydrolyzing class A beta-lactamase -blaZ blaZ_gen blaZ NF033139.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM penicillin-hydrolyzing class A beta-lactamase BlaZ -bla AMR bla - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactamase -ble-MBL sequest ble NF012202.0 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein Ble-MBL -ble-Sh ble ble-Sh NF000489.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN phleomycin/bleomycin binding protein Ble-Sh -ble-Sv ble ble NF000028.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMA family bleomycin binding protein -bleO sequest bleO NF000027.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein -ble_BLMT_gen sequest ble NF000005.4 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMT family bleomycin binding protein -ble_Tn5 ble_BLMT_gen ble - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein BLMT -ble sequest ble NF033156.1 140.00 140.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMA family bleomycin binding protein -blmA ble blmA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein BLMA -blmB_tlmB AMR blmB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase -blmB blmB_tlmB blmB NF000483.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase BlmB -bmaE VIRULENCE_Ecoli bmaE - 0.00 0.00 87.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE M agglutinin-type afimbrial adhesin BmaE/AfaE-8 -cadA_Lm P-type_ATPase cadA - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium-translocating P-type ATPase CadA -cadC_Lm HTH_5 cadC - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM Cd(II)-sensing metalloregulatory transcriptional repressor CadC -cadC_Sa HTH_5 cadC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM/LEAD/ZINC CADMIUM/LEAD/ZINC Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC -cadD METAL cadD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium resistance transporter CadD -cadR METAL cadR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium resistance transcriptional regulator CadR -capU VIRULENCE_Ecoli capU - 0.00 0.00 92.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE putative hexosyltransferase CapU -car(A) abcf-produ car(A) NF000166.1 1050.00 1050.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Car(A) -cat-TC catA9 cat-TC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-9 chloramphenicol O-acetyltransferase Cat-TC -cat86 catA6 cat86 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-6 chloramphenicol O-acetyltransferase Cat86 -catA10 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-10 chloramphenicol O-acetyltransferase -catA11 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase -catA13 catA catA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-13 chloramphenicol O-acetyltransferase -catA14 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-14 chloramphenicol O-acetyltransferase -catA15 catA catA15 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-15 chloramphenicol acetyltransferase CatA15 -catA16 catA catA16 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-16 chloramphenicol O-acetyltransferase CatQ -catA1 catA catA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-1 chloramphenicol O-acetyltransferase -catA2 catA catA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-2 chloramphenicol O-acetyltransferase CatII -catA3 catA catA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-3 chloramphenicol O-acetyltransferase CatIII -catA4 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-4 chloramphenicol O-acetyltransferase -catA5 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-5 chloramphenicol O-acetyltransferase -catA6 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-6 chloramphenicol O-acetyltransferase -catA7 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-7 chloramphenicol O-acetyltransferase -catA8 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-8 chloramphenicol O-acetyltransferase -catA9 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-9 chloramphenicol O-acetyltransferase -catA cat catA NF000491.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase -catB10 catB catB10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase CatB10 -catB1 catB catB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-1 chloramphenicol O-acetyltransferase CatB1 -catB2 catB catB2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-2 chloramphenicol O-acetyltransferase CatB2 -catB3 catB catB3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-3 chloramphenicol O-acetyltransferase CatB3 -catB7 catB catB7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-4 chloramphenicol O-acetyltransferase CatB7 -catB8 catB catB8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-3 chloramphenicol O-acetyltransferase CatB8 -catB9 catB catB9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-5 chloramphenicol O-acetyltransferase CatB9 -catB cat catB NF000490.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase -catC cat catC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase -catD catA11 catD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase CatD -catP catA11 catP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase CatP -catU catA catU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase -catV catA catV - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase CatV -cat AMR cat - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol O-acetyltransferase CAT -cblA bla-A2 cblA NF033098.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CblA family class A beta-lactamase -cdtB_III cdtB cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type III/V nuclease subunit CdtB -cdtB_II cdtB cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type II nuclease subunit CdtB -cdtB_IV cdtB cdtB - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type IV nuclease subunit CdtB -cdtB_I cdtB cdtB - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type I nuclease subunit CdtB -cdtB_Salmo VIRULENCE cdtB - 0.00 0.00 81.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin S-CDT -cdtB VIRULENCE_Ecoli cdtB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE cytolethal distending toxin nuclease subunit CdtB -cepA bla-A2 cepA NF033102.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CepA family class A extended-spectrum beta-lactamase -cepH blaCMY-FOX cepH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase CepH -cepS blaCMY-FOX cepS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase CepS -cfaC VIRULENCE_Ecoli cfaC - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE CFA/I pilus usher protein CfaC -cfiA_fam bla-B1 cfiA NF000322.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CfiA family subclass B1 metallo-beta-lactamase -cfr(B) cfr_gen cfr(B) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(B) -cfr(C) cfr_gen cfr(C) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(C) -cfr(D) cfr_gen cfr(D) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(D) -cfr(E) cfr_gen cfr(E) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(E) -cfr-Cb cfr_gen cfr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN Cfr family 23S rRNA (adenine(2503)-C(8))-methyltransferase -cfr_gen AMR cfr NF000424.3 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN Cfr family 23S rRNA (adenine(2503)-C(8))-methyltransferase -cfr cfr_gen cfr - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr -cfxA2 cfxA_fam cfxA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA2 -cfxA3 cfxA_fam cfxA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA3 -cfxA4 cfxA_fam cfxA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA4 -cfxA5 cfxA_fam cfxA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA5 -cfxA6 cfxA_fam cfxA6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA6 -cfxA_fam bla-A2 cfxA NF033100.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CfxA family class A broad-spectrum beta-lactamase -cfxA cfxA_fam cfxA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA -chrA METAL chrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CHROMATE CHROMATE chromate resistance efflux protein ChrA -chrB_rRNA_meth rlmA(II)_gen chrB NF000488.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase ChrB -chrR_I METAL chrR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CHROMATE CHROMATE class I chromate reductase ChrR -cif VIRULENCE_Ecoli cif - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector Cif -cipA cfr_gen cipA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase CipA -clbA cfr_gen clbA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA -clbB cfr_gen clbB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB -clbC cfr_gen clbC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbC -cmlA1 cmlA cmlA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA1 -cmlA4 cmlA cmlA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA4 -cmlA5 cmlA cmlA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA5 -cmlA_floR MFS_efflux_CHL cml NF033134.0 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL CmlA/FloR family chloramphenicol efflux MFS transporter -cmlA cmlA_floR cmlA NF000509.1 875.00 835.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL CmlA family chloramphenicol efflux MFS transporter -cmlB1 cmlA_floR cmlB1 NF012203.0 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlB1 -cmlB cmlA_floR cmlB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlB -cmlR cmx_cmrA cmlR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlR -cmlV cmx_cmrA cmlV NF012199.0 830.00 830.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlV -cml_Ensi cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter -cml_Myxo cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter -cml_Ochro cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter -cmrA cmx_cmrA cmrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmrA -cmx_cmrA MFS_efflux_CHL cmx_cmrA NF033135.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cmx/CmrA family chloramphenicol efflux MFS transporter -cmx cmx_cmrA cmx NF000510.1 800.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter Cmx -cna VIRULENCE_Saur cna - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE collagen adhesin Cna -cnf1 cnf_gen cnf1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF1 -cnf2 cnf_gen cnf2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF2 -cnf3 cnf_gen cnf3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF3 -cnf_gen VIRULENCE_Ecoli cnf - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE CNF1 family cytotoxic necrotizing factor -cnrA METAL-RND-IM cnrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel efflux RND transporter permease subunit CnrA -cnrC METAL cnrC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel efflux RND transporter outer membrane subunit CnrC -cnrT METAL cnrT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel diffusion facilitator CnrT -cnrY METAL cnrY - 0.00 0.00 80.00 90.00 90.00 81.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance system anti-sigma factor CnrY -cofA pilus cofA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type IV pilus CFA/III major pilin -copA_Ehir P-type_ATPase copA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-translocating P-type ATPase CopA -copB_Ehir P-type_ATPase copB - 0.00 0.00 77.00 90.00 90.00 80.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver-translocating P-type ATPase CopB -copC_Psyr copC copC - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper homeostasis periplasmic binding protein CopC -copC METAL copC - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL copper homeostasis periplasmic binding protein CopC -copD METAL copD - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL copper homeostasis membrane protein CopD -copL METAL copL - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER transcriptional regulator CopL -copP METAL copP NF033781.1 112.00 112.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER copper-binding metallochaperone CopP -copR_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CopR family heavy metal response regulator -copR copR_gen copR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER heavy metal response regulator transcription factor CopR -copS METAL copS - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance membrane spanning protein CopS -cpa VIRULENCE_Cperf cpa - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE alpha-toxin -cpb2 VIRULENCE_Cperf cpb2 - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-2 toxin CPB2 -cpb VIRULENCE_Cperf cpb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-channel forming cytolysin CPB -cpd VIRULENCE_Cperf cpd - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-channel forming cytolysin CPD -cpe VIRULENCE_Cperf cpe - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE enterotoxin CPE -cphA1 cphA cphA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B2 metallo-beta-lactamase CphA1 -cphA bla-B2 cphA NF000329.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CphA family subclass B2 metallo-beta-lactamase -cpt AMR cpt NF033114.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol phosphotransferase CPT -crcB BIOCIDE crcB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS BIOCIDE FLUORIDE FLUORIDE fluoride efflux transporter CrcB -crpP AMR crpP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FLUOROQUINOLONE FLUOROQUINOLONE ciprofloxacin resistance protein CrpP -cueA P-type_ATPase cueA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance metal-translocating P1-type ATPase CueA -cusB_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CusB family metal efflux RND transporter periplasmic adaptor subunit -cvaC VIRULENCE_Ecoli cvaC - 0.00 0.00 83.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE colicin V -dfr1_rpt dfrA dfrA NF000008.1 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant repeat-containing dihydrofolate reductase DfrA1 -dfrA10 dfr_gen dfrA10 NF000018.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA10 -dfrA12_A21 dfr_gen dfrA NF000055.3 330.00 330.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM DfrA12/DfrA21 family trimethoprim-resistant dihydrofolate reductase -dfrA12 dfrA12_A21 dfrA12 NF000053.2 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA12 -dfrA14 dfrA dfrA14 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA14 -dfrA15 dfrA dfrA15 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA15 -dfrA16 dfrA dfrA16 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA16 -dfrA17 dfrA dfrA17 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA17 -dfrA18 dfr_gen dfrA18 NF000039.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA18 -dfrA19 dfr_gen dfrA19 NF000041.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA19 -dfrA1 dfrA dfrA1 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA1 -dfrA20 dfr_gen dfrA20 NF000127.2 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA20 -dfrA21 dfrA12_A21 dfrA21 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA21 -dfrA22 dfrA12_A21 dfrA22 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA22 -dfrA23 dfr_gen dfrA23 NF000134.2 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA23 -dfrA24 dfr_gen dfrA24 NF000146.2 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA24 -dfrA25 dfrA dfrA25 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA25 -dfrA26 dfr_gen dfrA26 NF000006.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA26 -dfrA27 dfrA dfrA27 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA27 -dfrA29 dfrA dfrA29 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA29 -dfrA30 dfrA dfrA30 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA30 -dfrA31 dfrA dfrA31 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA31 -dfrA32 dfrA dfrA32 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 20.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA32 -dfrA33 dfrA12_A21 dfrA33 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA33 -dfrA34 dfr_gen dfrA34 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA34 -dfrA35 dfr_gen dfrA35 NF033851.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA35 -dfrA36 dfr_gen dfrA36 NF033868.0 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA36 -dfrA37 dfrA dfrA37 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA37 -dfrA38 dfr_gen dfrA38 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA38 -dfrA39 dfr_gen dfrA39 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA39 -dfrA3b dfr_gen dfrA3b NF000065.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA3b -dfrA3 dfr_gen dfrA3 NF000019.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA3 -dfrA42 dfr_gen dfrA42 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA42 -dfrA43 dfr_gen dfrA43 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA43 -dfrA44 dfr_gen dfrA44 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA44 -dfrA46 dfrA dfrA46 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA46 -dfrA47 dfrA12_A21 dfrA47 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA47 -dfrA48 dfrA dfrA48 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA48 -dfrA4 dfr_gen dfrA4 - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA4 -dfrA5 dfrA dfrA5 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA5 -dfrA6 dfrA dfrA6 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA6 -dfrA7 dfrA dfrA7 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA7 -dfrA8 dfr_gen dfrA8 NF000126.2 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA8 -dfrA9 dfr_gen dfrA9 NF000109.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA9 -dfrA dfr_gen dfrA NF000330.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA -dfrB1 dfrB dfrB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB1 -dfrB2 dfrB dfrB2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB2 -dfrB4 dfrB dfrB4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB4 -dfrB5 dfrB dfrB5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB5 -dfrB dfr_gen dfrB NF000331.1 160.00 160.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB -dfrC dfr_gen dfrC NF000155.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrC -dfrD dfr_DGK dfrD NF000159.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrD -dfrE dfr_gen dfrE NF040541.1 347.00 347.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrE -dfrF dfr_gen dfrF NF000333.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrF -dfrG dfr_DGK dfrG NF000143.1 365.00 365.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrG -dfrI dfr_gen dfrI NF000012.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrI -dfrK dfr_DGK dfrK - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrK -dfr_DGK dfr_gen dfr NF000332.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM DfrD/DfrG/DfrK family trimethoprim-resistant dihydrofolate reductase -dfr_gen AMR dfrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase -dpsA METAL dpsA - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL non-specific DNA-binding protein DpsA -eae_typing_E._coli VIRULENCE eae NF033627.3 1400.00 1400.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN INTIMIN intimin -eat(A) lsa eat(A) - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 0 AMR AMR PLEUROMUTILIN PLEUROMUTILIN ABC-F type ribosomal protection-like protein Eat(A) -eatA auto_tox eatA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin EatA -ednB VIRULENCE_Saur ednB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE epidermal cell differentiation inhibitor EdnB -efa1 VIRULENCE_Ecoli efa1 - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE lymphostatin Efa1/LifA -efflux_TF EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR antibiotic efflux transcriptional regulator -ehxA VIRULENCE_Ecoli ehxA - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE enterohemolysin EhxA -eilA VIRULENCE_Ecoli eilA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE HilA family transcriptional regulator EilA -emhA RND-peri emhA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter periplasmic adaptor subunit EmhA -emhB RND-IM emhB - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter permease subunit EmhB -emhC adeC-K-oprM emhC - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter outer membrane subunit EmhC -emrA-sm MFS_efflux emrA - 0.00 0.00 88.00 90.00 90.00 88.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -emrB-sm MFS_efflux emrB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter permease subunit EmrB -emrC RND-OM emrC - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux transporter outer membrane subunit EmrC -emrD3 MFS_efflux emrD3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter EmrD-3 -emrD MFS_efflux emrD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter EmrD -emtA_fam AMR emt NF033398.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AVILAMYCIN AVILAMYCIN EmtA family 23S rRNA (guanine(2470)) methyltransferase -emtA emtA_fam emtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AVILAMYCIN AVILAMYCIN 23S rRNA (guanine(2470)) methyltransferase EmtA -epeA auto_tox epeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EpeA -epsilon-1 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon-2 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon-3 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon-4 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon-6 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon-7 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN XI intimin type xi -epsilon-8 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -epsilon eae_typing_E._coli eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon -ere(A) ere ere(A) NF000208.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE EreA family erythromycin esterase -ere(B) ere ere(B) NF000209.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN EreB family erythromycin esterase -ere(D) ere ere(D) NF000516.1 800.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN EreD family erythromycin esterase -ere AMR ere - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE erythromycin esterase -erm(30) erm-23S_rRNA erm(30) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(30) -erm(31) erm-23S_rRNA erm(31) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(31) -erm(32) rlmA(II)_gen erm(32) NF000133.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN 23S rRNA (guanine(748)-N(1))-methyltransferase Erm(32) -erm(33) erm-23S_rRNA erm(33) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(33) -erm(34) erm-23S_rRNA erm(34) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) -erm(35) erm-23S_rRNA erm(35) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(35) -erm(36) erm-23S_rRNA erm(36) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(36) -erm(37) erm_gen erm(37) NF000468.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(37) -erm(38) erm-23S_rRNA erm(38) NF012218.0 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(38) -erm(39) erm-23S_rRNA erm(39) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(39) -erm(40) erm-23S_rRNA erm(40) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(40) -erm(42) erm-23S_rRNA erm(42) NF000077.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(42) -erm(43) erm-23S_rRNA erm(43) NF000412.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(43) -erm(44)v erm-23S_rRNA erm(44)v - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(44)v -erm(44) erm-23S_rRNA erm(44) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(44) -erm(45) erm-23S_rRNA erm(45) NF000411.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(45) -erm(46) erm-23S_rRNA erm(46) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(46) -erm(47) erm-23S_rRNA erm(47) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(47) -erm(48) erm-23S_rRNA erm(48) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(48) -erm(49) erm-23S_rRNA erm(49) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(49) -erm(A) erm-23S_rRNA erm(A) NF012222.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) -erm(B) erm-23S_rRNA erm(B) NF012220.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) -erm(C) erm-23S_rRNA erm(C) NF012219.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) -erm(D) erm-23S_rRNA erm(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(D) -erm(E) erm_SHROVE erm(E) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(E) -erm(F) erm-23S_rRNA erm(F) NF012223.0 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) -erm(G) erm-23S_rRNA erm(G) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) -erm(H) erm_SHROVE erm(H) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(H) -erm(K) erm-23S_rRNA erm(K) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(K) -erm(N) erm-23S_rRNA erm(N) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(N) -erm(O) erm_SHROVE erm(O) NF000087.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(O) -erm(Q) erm-23S_rRNA erm(Q) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Q) -erm(R) erm_SHROVE erm(R) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(R) -erm(S) erm_SHROVE erm(S) NF000024.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(S) -erm(T) erm-23S_rRNA erm(T) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) -erm(U) erm-23S_rRNA erm(U) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(U) -erm(V) erm_SHROVE erm(V) NF000047.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(V) -erm(W) erm-23S_rRNA erm(W) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(W) -erm(X) erm-23S_rRNA erm(X) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) -erm(Y) erm-23S_rRNA erm(Y) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Y) -erm(Z) erm-23S_rRNA erm(Z) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Z) -erm-23S_rRNA erm_gen erm NF000499.1 215.00 215.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S ribosomal RNA methyltransferase Erm -erm_SHROVE erm-23S_rRNA erm NF000337.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ErmE/ErmH/ErmO/ErmR family 23S rRNA (adenine(2058)-N(6))-methyltransferase -erm_gen AMR erm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Erm family 23S rRNA (adenine(2058)-N(6))-methyltransferase -espA VIRULENCE_Ecoli espA - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocon filament protein EspA -espB VIRULENCE_Ecoli espB - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocon pore-forming subunit EspB -espC auto_tox espC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin EspC -espF VIRULENCE_Ecoli espF - 0.00 0.00 75.00 90.00 90.00 80.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE effector EspF -espI auto_tox espI - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EspI -espJ_gen VIRULENCE_Ecoli espJ - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE EspJ family T3SS effector ADP-ribosyltransferase -espJ espJ_gen espJ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector ADP-ribosyltransferase EspJ -espK VIRULENCE_Ecoli espK - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector EspK -espP auto_tox espP - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EspP -espX1 VIRULENCE_Ecoli espX1 - 0.00 0.00 84.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector EspX1 -estDL136 AMR estDL136 NF033149.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol hydrolase -estX AMR estX - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR alpha/beta fold putative hydrolase EstX -eta VIRULENCE_Saur eta - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE exfoliative toxin A -etb VIRULENCE_Saur etb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE exfoliative toxin B -etpD VIRULENCE_Ecoli etpD - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE variant type II secretion system secretin EtpD -etx VIRULENCE_Cperf etx - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE epsilon toxin type B -f17a VIRULENCE_Ecoli f17a - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F17A fimbrial adhesin -f17g VIRULENCE_Ecoli f17g - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F17G fimbrial adhesin -faeG VIRULENCE_Ecoli faeG - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE F4 (K88) fimbria major subunit/adhesin FaeG -farB AMR farB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX fatty acid resistance MFS efflux transporter permease subunit FarB -fasA VIRULENCE_Ecoli fasA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F6 fimbrial major subunit FasA -fdeC VIRULENCE_Ecoli fdeC - 0.00 0.00 88.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE intimin-like adhesin FdeC -fedA VIRULENCE_Ecoli fedA - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE F18 fimbrial major subunit FedA -fedF VIRULENCE_Ecoli fedF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F18 fimbrial adhesin subunit FedF -fexA MFS_efflux_CHL fexA NF000218.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FexA -fieF CDF_efflux fieF - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS METAL CDF family cation-efflux transporter FieF -fim41a VIRULENCE_Ecoli fim41a - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE fimbrial adhesin F41 protein Fim41a -floR2 floR floR2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FloR2 -floR cmlA_floR floR NF000219.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FloR -focG VIRULENCE_Ecoli focG - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE F1C fimbria minor subunit FocG -fomA AMR fomA NF000338.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance kinase FomA -fomB AMR fomB NF000361.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FomB family phosphonate monophosphate kinase -fos-Crono fos_GT fos NF000339.2 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase -fos-Vibrio fos_GT fos - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosG/FosC2-related fosfomycin resistance glutathione transferase -fosA5_fam fosA_gen fosA NF040540.1 310.00 310.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA5 family fosfomycin resistance glutathione transferase -fosA7_fam fosA_gen fosA7 NF032892.0 305.00 305.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA7 family fosfomycin resistance glutathione transferase -fosA8_fam fosA_gen fosA8 NF033933.0 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA8 family fosfomycin resistance glutathione transferase -fosA_PA1129 fos_GT fosA NF000094.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase -fosA_gen fos_GT fosA NF000221.4 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase -fosB-Bcer fosB_gen fosB NF000098.1 295.00 295.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB family fosfomycin resistance bacillithiol transferase -fosB-Saur fosB_gen fosB NF000085.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB1/FosB3 family fosfomycin resistance bacillithiol transferase -fosB-Sepi fosB_gen fosB NF000063.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB family fosfomycin resistance bacillithiol transferase -fosB_gen fos_gen fosB NF000493.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB/FosD family fosfomycin resistance bacillithiol transferase -fosC2 fos_GT fosC2 NF000074.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosC2 family fosfomycin resistance glutathione transferase -fosC AMR fosC NF000122.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance kinase FosC -fosD fosB_gen fosD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance bacillithiol transferase FosD -fosE fosX_gen fosE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosE -fosF fos_GT fosF NF000494.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosF -fosG fos_GT fosG NF000467.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosG family fosfomycin resistance glutathione transferase -fosI fosX_gen fosI - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosI -fosK fos_GT fosK NF000495.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosK -fosL fos_GT fosL - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosL -fosM1 fosM fosM1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM1 -fosM2 fosM fosM2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM2 -fosM3 fosM fosM3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM3 -fosM fos_gen fosM NF038306.1 255.00 255.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosM family fosfomycin resistance protein -fosU fos_GT fosU NF038311.1 295.00 295.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosU family fosfomycin resistance glutathione transferase -fosX_gen fos_gen fosX NF000222.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosX/FosE/FosI family fosfomycin resistance hydrolase -fosX fosX_gen fosX - 0.00 0.00 84.00 90.00 90.00 90.00 90.00 35.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosX -fos_A3_A4 fosA_gen fosA NF000075.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA3/FosA4 family fosfomycin resistance glutathione transferase -fos_A_A2 fosA_gen fosA NF000026.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA/FosA2 family fosfomycin resistance glutathione transferase -fos_GT fos_gen fos NF000496.1 190.00 190.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase -fos_gen AMR fos - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin inactivation enzyme -fos_related fos_gen fos NF000125.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN Fos family putative thiol transferase -fusBCD_gen AMR fus - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusB/FusC/FusD family EF-G-binding protein -fusB_set fusBCD_gen fusB NF000340.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusB family fusidic acid resistance EF-G-binding protein -fusB fusB_set fusB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid resistance EF-G-binding protein FusB -fusC_set fusBCD_gen fusC NF000341.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusC family fusidic acid resistance EF-G-binding protein -fusD fusBCD_gen fusD NF000460.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusD family fusidic acid resistance EF-G-binding protein -fusF fusBCD_gen fusF NF000503.1 435.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid resistance EF-G-binding protein FusF -fusH AMR fusH NF000157.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid esterase FusH -gamma-1 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -gamma-2 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN THETA intimin type theta -gamma-3 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -gamma-4 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -gamma-5 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -gamma-6 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -gamma eae_typing_E._coli eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma -garos_AAA AMR gar_fam NF038208.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN garosamine-type aminoglycoside resistance ATP-binding protein -gar garos_AAA gar - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN gentamicin resistance ATP-binding protein Gar -golS METAL golS - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL GOLD GOLD Au(I) sensor transcriptional regulator GolS -golT P-type_ATPase golT - 0.00 0.00 92.00 90.00 90.00 92.00 90.00 25.00 1 STRESS METAL COPPER/GOLD COPPER/GOLD gold/copper-translocating P-type ATPase GolT -grdA garos_AAA grdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN gentamicin resistance ATP-binding protein GrdA -grm rmt grm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE Grm family 16S rRNA (guanine(1405)-N(7))-methyltransferase -hbp_auto auto_tox - - 0 0 94.00 90.00 90.00 96.00 90.00 25.00 0 VIRULENCE VIRULENCE hemoglobin-binding protease autotransporter Hbp -hld VIRULENCE_Saur hld - 0.00 0.00 91.00 90.00 90.00 91.00 90.00 90.00 1 VIRULENCE VIRULENCE delta-hemolysin -hlgA VIRULENCE_Saur hlgA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgAB subunit A -hlgB VIRULENCE_Saur hlgB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgAB/HlgCB subunit B -hlgC VIRULENCE_Saur hlgC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgCB subunit C -hlyA-alpha VIRULENCE_Ecoli hlyA-alpha - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE RTX toxin hemolysin HlyA -hlyE VIRULENCE_Ecoli hlyE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE hemolysin HlyE -hmrM MATE_efflux hmrM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX sodium-coupled multidrug efflux MATE transporter HmrM -hugA bla-A hugA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase -iap VIRULENCE_Cperf iap - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin iota enzymatic subunit Ia -ibeA VIRULENCE_Ecoli ibeA - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE putative intracellular survival FAD-dependent oxidoreductase IbeA -ibp VIRULENCE_Cperf ibp - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin iota binding subunit Ib -icaC VIRULENCE_Saur icaC - 0.00 0.00 50.00 90.00 90.00 75.00 90.00 40.00 1 VIRULENCE VIRULENCE polysaccharide intercellular adhesin biosynthesis/export protein IcaC -icr-Mo pmrC_gen icr-Mo - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR COLISTIN COLISTIN phosphoethanolamine--lipid A transferase ICR-Mo -iha OM_sidero iha - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE bifunctional siderophore receptor/adhesin Iha -iota-1 iota eae - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN IOTA intimin type iota -iota eae_typing_E._coli eae - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN IOTA intimin type iota -ipaD VIRULENCE_Ecoli ipaD - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system needle tip complex protein IpaD -ipaH1 ipa_gen ipaH1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH1/H6 -ipaH2 ipa_gen ipaH2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH2 -ipaH3 ipa_gen ipaH3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH3 -ipaH4 ipa_gen ipaH4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH4/H7 -ipaH5 ipa_gen ipaH5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH5 -ipaH9.8 ipa_gen ipaH9.8 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -ipa_gen VIRULENCE_Ecoli ipa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase -ireA OM_sidero ireA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE TonB-dependent siderophore receptor IreA -iri rox_gen iri NF000343.1 950.00 950.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase Iri -iroB VIRULENCE iroB - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 1 VIRULENCE VIRULENCE salmochelin biosynthesis C-glycosyltransferase IroB -iroC VIRULENCE iroC - 0.00 0.00 75.00 90.00 90.00 82.00 90.00 25.00 1 VIRULENCE VIRULENCE salmochelin/enterobactin export ABC transporter IroC -iroD VIRULENCE iroD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catecholate siderophore esterase IroD -iroE VIRULENCE_Ecoli iroE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catecholate siderophore esterase IroE -iroN OM_sidero iroN - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE siderophore salmochelin receptor IroN -iss VIRULENCE_Ecoli iss - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE increased serum survival lipoprotein Iss -iucA VIRULENCE_Ecoli iucA - 0.00 0.00 73.00 80.00 90.00 83.00 90.00 25.00 1 VIRULENCE VIRULENCE aerobactin synthase IucA -iucB VIRULENCE iucB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE N(6)-hydroxylysine O-acetyltransferase IucB -iucC VIRULENCE iucC - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE NIS family aerobactin synthetase IucC -iucD VIRULENCE iucD - 0.00 0.00 82.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE NADPH-dependent L-lysine N(6)-monooxygenase IucD -iutA VIRULENCE_Ecoli iutA - 0.00 0.00 77.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE ferric aerobactin receptor IutA -kamB npmA_gen kamB NF000363.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase KamB -katP VIRULENCE_Ecoli katP - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catalase/peroxidase KatP -kdeA MFS_efflux kdeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter KdeA -klaB METAL klaB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance system protein klaB -klaC METAL klaC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance system protein klaC -lambda-2 lambda eae - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 70.00 1 VIRULENCE VIRULENCE INTIMIN LAMBDA intimin type lambda -lambda eae_typing_E._coli eae - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 70.00 1 VIRULENCE VIRULENCE INTIMIN LAMBDA intimin type lambda -lin abc-f lin - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lmo0919 family lincomycin resistance ABC-F type ribosomal protection protein -lmrC_abcf abc-f lmrC - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR FOSFOMYCIN FOSFOMYCIN ABC-F type ribosomal protection protein LmrC -lmrS BIOCIDE lmrS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE MACROLIDE/PHENICOL CHLORAMPHENICOL/ERYTHROMYCIN multidrug efflux MFS transporter LmrS -lngA pilus lngA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type IV pilus longus major pilin -lnu(A) lnu_AE lnu(A) NF000236.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(A) -lnu(AN2) lnu_AE lnu(AN2) NF000153.1 340.00 340.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(AN2) -lnu(B) lnu_BFG lnu(B) NF000235.3 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(B) -lnu(C) lnu_CDP lnu(C) NF000141.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(C) -lnu(D) lnu_CDP lnu(D) NF000017.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(D) -lnu(E) lnu_AE lnu(E) NF000478.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(E) -lnu(F) lnu_BFG lnu(F) NF000119.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(F) -lnu(G) lnu_BFG lnu(G) NF033182.0 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(G) -lnu(P) lnu_CDP lnu(P) NF000061.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(P) -lnu_AE lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase -lnu_BFG lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Lnu(B)/Lnu(F)/Lnu(G) family lincosamide nucleotidyltransferase -lnu_CDP lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Lnu(C)/Lnu(D)/Lnu(P) family lincosamide nucleotidyltransferase -lnu AMR lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase -lpfA-O113 lpfA_gen lpfA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA-O113 -lpfA1 lpfA_gen lpfA1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA1 -lpfA2 lpfA_gen lpfA2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA2 -lpfA_gen VIRULENCE_Ecoli lpfA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA -lsa(A) lsa lsa(A) - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(A) -lsa(B) lsa lsa(B) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(B) -lsa(C) lsa lsa(C) - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(C) -lsa(D) lsa lsa(D) - 0.00 0.00 83.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(D) -lsa(E) lsa lsa(E) - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(E) -lsa abc-f lsa NF000167.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN Lsa family ABC-F type ribosomal protection protein -ltcA VIRULENCE_Ecoli ltcA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-labile enterotoxin LT subunit A -lukD VIRULENCE_Saur lukD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component leukocidin LukED subunit D -lukE VIRULENCE_Saur lukE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component leukocidin LukED subunit E -lukF-PV VIRULENCE_Saur lukF-PV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Panton-Valentine bi-component leukocidin subunit F -lukS-PV VIRULENCE_Saur lukS-PV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Panton-Valentine bi-component leukocidin subunit S -macro_glyco AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR MACROLIDE MACROLIDE macrolide glycosyltransferase -mchB VIRULENCE_Ecoli mchB - 0.00 0.00 99.00 90.00 95.00 99.00 95.00 40.00 1 VIRULENCE VIRULENCE microcin H47 -mchF VIRULENCE_Ecoli mchF - 0.00 0.00 96.00 90.00 90.00 97.00 90.00 25.00 1 VIRULENCE VIRULENCE microcin H47 export transporter peptidase/ATP-binding subunit MchF -mco multi_Cu_ox mco - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER multi-copper oxidase Mco -mcr-10 pmrC_gen mcr-10 NF033862.2 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-10 family phosphoethanolamine--lipid A transferase -mcr-1 pmrC_gen mcr-1 NF000465.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-1 family phosphoethanolamine--lipid A transferase -mcr-2 pmrC_gen mcr-2 NF012159.0 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-2 family phosphoethanolamine--lipid A transferase -mcr-3_set pmrC_gen mcr-3 NF033409.0 1075.00 1075.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-3 family phosphoethanolamine--lipid A transferase -mcr-3 mcr-3_set mcr-3 NF033408.5 1225.00 1225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-3 family phosphoethanolamine--lipid A transferase -mcr-4 pmrC_gen mcr-4 NF033462.1 1225.00 1225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-4 family phosphoethanolamine--lipid A transferase -mcr-5 pmrC_gen mcr-5 NF033463.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-5 family phosphoethanolamine--lipid A transferase -mcr-6 pmrC_gen mcr-6 NF033670.1 1235.00 1235.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-6 family phosphoethanolamine--lipid A transferase -mcr-7 pmrC_gen mcr-7 NF033671.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-7 family phosphoethanolamine--lipid A transferase -mcr-8 pmrC_gen mcr-8 NF033669.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-8 family phosphoethanolamine--lipid A transferase -mcr-9 pmrC_gen mcr-9 NF033836.1 1240.00 1240.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR COLISTIN COLISTIN MCR-9 family phosphoethanolamine--lipid A transferase -mdsA RND-peri mdsA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MdsA -mdsB RND-IM mdsB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit MdsB -mdtM MFS_efflux mdtM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter MdtM -mecA-ceftar mecA mecA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN ceftaroline-resistant PBP2a family peptidoglycan transpeptidase MecA -mecA1 mec_gen mecA1 NF000410.1 1480.00 1480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA1 -mecA2 mec_gen mecA2 NF000408.1 1525.00 1525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA2 -mecA mec_gen mecA NF000409.1 1490.00 1490.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -mecB mec_gen mecB NF000406.1 1450.00 1450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecB -mecC2 mec_gen mecC2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC2 -mecC3 mec_gen mecC3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC3 -mecC mec_gen mecC NF000407.1 1500.00 1500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC -mecD mec_gen mecD NF033378.1 1450.00 1450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecD -mecI_of_mecA mecI mecI NF000243.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN mecA-type methicillin resistance repressor MecI -mecI_of_mecC mecI mecI NF000244.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN mecC-type methicillin resistance repressor MecI -mecI blaI_gen mecI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN methicillin resistance repressor MecI -mecR1 blaR1_gen mecR1 NF033109.1 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN beta-lactam sensor/signal transducer MecR1 -mec_gen AMR mec NF000237.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase -mef(A) mef_gen mef(A) NF000245.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN macrolide efflux MFS transporter Mef(A) -mef(B) mef_gen mef(B) NF000051.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(B) -mef(C) mef_gen mef(C) NF000246.1 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(C) -mef(D) mef_gen mef(D) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 2 AMR AMR MACROLIDE ERYTHROMYCIN macrolide efflux MFS transporter Mef(D) -mef(En2) mef_gen mef(En2) NF000154.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(En2) -mef(F) mef_gen mef(F) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(F) -mef_gen MFS_efflux mef - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mef family macrolide efflux MFS transporter -mepA MATE_efflux mepA NF000131.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MATE transporter MepA -merA METAL merA TIGR02053.1 454.45 454.45 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury(II) reductase -merB1 merB merB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial lyase MerB1 -merB_gen METAL merB - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL organomercurial lyase MerB -merB merB_gen merB NF033555.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial lyase MerB -merC METAL merC NF033784.1 140.00 140.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial transporter MerC -merD METAL merD NF033783.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance co-regulator MerD -merE METAL merE NF010310.2 80.00 80.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY broad-spectrum mercury transporter MerE -merF METAL merF NF033565.0 50.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system transport protein MerF -merG METAL merG NF033786.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY PHENYLMERCURY phenylmercury resistance protein MerG -merP METAL merP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system substrate-binding protein MerP -merR_Bc1 merR_gen merR1 - 0.00 0.00 82.00 90.00 90.00 88.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR1 -merR_Bc2 merR_gen merR2 - 0.00 0.00 76.00 90.00 90.00 85.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR2 -merR_Ps merR_gen merR NF010315.0 261.00 261.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR -merR_gen METAL merR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR -merT_RC607 merT_gen merT NF033560.1 130.00 130.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT -merT_gen METAL merT - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL mercury resistance system transport protein MerT -merT_pI258 merT_gen merT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT -merT merT_gen merT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT -met_repress METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL metal-sensing transcriptional repressor -mexA RND-peri mexA NF033834.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MexA -mexE RND-peri mexE NF000249.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX MexE family multidrug efflux RND transporter periplasmic adaptor subunit -mexX_amrA RND-peri mexX - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR MexX/AmrA family multidrug efflux RND transporter periplasmic adaptor subunit -mexX mexX_amrA mexX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MexX -mgt macro_glyco mgt NF033129.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide-inactivating glycosyltransferase -mph(A) mph_gen mph(A) NF000254.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(A) family macrolide 2'-phosphotransferase -mph(B) mph_gen mph(B) NF000242.2 615.00 615.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(B) family macrolide 2'-phosphotransferase -mph(C) mph_gen mph(C) NF000240.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(C) family macrolide 2'-phosphotransferase -mph(E) mph_3 mph(E) NF012158.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(E) family macrolide 2'-phosphotransferase -mph(F) mph_gen mph(F) NF000255.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(F) family macrolide 2'-phosphotransferase -mph(G) mph_3 mph(G) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(G) family macrolide 2'-phosphotransferase -mphH mph_gen mphH - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphH -mphJ mph_gen mphJ - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE ERYTHROMYCIN/TELITHROMYCIN/TYLOSIN macrolide 2'-phosphotransferase MphJ -mphK mph_gen mphK - 0.00 0.00 80.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphK -mphL mph_gen mphL NF038057.1 612.00 612.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphL -mphM mph_gen mphM NF038056.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphM -mphN mph_gen mphN - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphN -mph_3 mph_gen mph NF000241.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(E)/Mph(G) family macrolide 2'-phosphotransferase -mph_gen AMR mph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide phosphotransferase -mrdH rcnA_gen mrdH - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/NICKEL COPPER/NICKEL Ni(II)/Co(II) efflux transporter permease subunit MrdH -mreA met_repress mreA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL metal-sensing transcriptional repressor MreA -msr(A) msr msr(A) NF000256.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(A) -msr(C) msr msr(C) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(C) -msr(D) msr msr(D) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE ERYTHROMYCIN ABC-F type ribosomal protection protein Msr(D) -msr(E) msr msr(E) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(E) -msr(F) msr msrF - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(F) -msr(G) msr msr(G) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(G) -msr(H) msr msrH - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(H) -msr abc-f msr NF000168.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Msr family ABC-F type ribosomal protection protein -mtrA_Ngon efflux_TF mtrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux transporter MtrCDE transcriptional activator MtrA -mtrC RND-peri mtrC - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MtrC -mtrF BIOCIDE mtrF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX AbgT family antimetabolite efflux transporter MtrF -mtrR EFFLUX mtrR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux system transcriptional repressor MtrR -multi_CopA multi_Cu_ox copA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER laccase-like oxidase CopA -multi_Cu_ox METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL multi-copper oxidase -mupA AMR mupA NF000257.1 1900.00 1900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MUPIROCIN MUPIROCIN mupirocin-resistant isoleucine--tRNA ligase MupA -mupB AMR mupB NF000258.1 1900.00 1900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MUPIROCIN MUPIROCIN mupirocin-resistant isoleucine--tRNA ligase MupB -myrA rlmA(II)_gen myrA NF000476.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase MyrA -nccH METAL nccH - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 STRESS METAL CADMIUM/COBALT/NICKEL CADMIUM/COBALT/NICKEL nickel/cobalt/cadmium resistance ECF sigma factor NccH -nccX PERI-SENSOR nccX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM/COBALT/NICKEL CADMIUM/COBALT/NICKEL periplasmic metal sensor NccX -ncrA METAL ncrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL Metal Resistance -ncrB met_repress ncrB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL nickel-sensing transcriptional repressor NcrB -ncrC rcnA_gen ncrC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER/NICKEL COPPER/NICKEL Ni(II)/Co(II) efflux transporter permease subunit NcrC -ncrY METAL ncrY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL nickel resistance OB fold protein NcrY -netB VIRULENCE_Cperf netB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE necrotizing enteritis toxin NetB -netF VIRULENCE_Cperf netF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE necrotizing enteritis toxin NetF -nfaE VIRULENCE_Ecoli nfaE - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE Dr family non-fimbrial adhesin I chaperone NfaE -nimABCDEF AMR nim NF000261.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE NimABCDEF family nitroimidazole resistance protein -nimA nimABCDEF nimA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimA -nimB nimABCDEF nimB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimB -nimC nimABCDEF nimC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimC -nimD nimABCDEF nimD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimD -nimE nimABCDEF nimE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimE -nimIJ AMR nimIJ NF000262.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE NimIJ family nitroimidazole resistance protein -nimI nimIJ nimI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimI -nimJ nimIJ nimJ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimJ -nirA METAL nirA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance membrane nickel efflux protein NirA -nirB met_repress nirB - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel-sensing transcriptional repressor NirB -nirD METAL nirD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance OB fold protein NirD -nleA VIRULENCE_Ecoli nleA - 0.00 0.00 85.00 90.00 90.00 88.00 90.00 80.00 1 VIRULENCE VIRULENCE type III secretion system effector NleA -nleB2 VIRULENCE_Ecoli nleB2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector arginine glycosyltransferase NleB2 -nleB VIRULENCE_Ecoli nleB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector arginine glycosyltransferase NleB -nleC VIRULENCE_Ecoli nleC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector zinc metalloprotease NleC -norM MATE_efflux norM NF000263.1 950.00 950.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX sodium-coupled multidrug efflux MATE transporter NorM -npmA_gen AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase -npmA npmA_gen npmA NF000030.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase NpmA -nreB METAL nreB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance MFS transporter NreB -nshR_tsnR AMR nshR NF000477.1 425.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON NshR/TsnR family 23S rRNA methyltransferase -nshR nshR_tsnR nshR NF000035.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON NshR family nosiheptide/thiostrepton resistance 23S rRNA methyltransferase -ole(B) abcf-produ ole(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Ole(B) -oleD mgt oleD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE oleandomycin glycosyltransferase OleD -oleI macro_glyco oleI NF000362.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE OleI family self-immunity macrolide glycosyltransferase -optrA abc-f optrA NF000514.1 1450.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE ABC-F type ribosomal protection protein OptrA -oqxA RND-peri oqxA NF000272.1 875.00 875.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE multidrug efflux RND transporter periplasmic adaptor subunit OqxA -oqxB RND-IM oqxB NF000037.1 2200.00 2200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE multidrug efflux RND transporter permease subunit OqxB -otr(A) tet_rib_protect otr(A) NF000120.3 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Otr(A) -otr(B) tet_MFS_efflux otr(B) NF000095.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE oxytetracycline resistance efflux MFS transporter OtrB -papA VIRULENCE_Ecoli papA - 0.00 0.00 82.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria major subunit PapA -papC VIRULENCE_Ecoli papC - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial usher protein PapC -papE VIRULENCE_Ecoli papE - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial minor subunit PapE -papF VIRULENCE_Ecoli papF - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial tip protein PapF -papG-III papG papG-III - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-III -papG-II papG papG-II - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-II -papG-I papG papG-I - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-I -papG VIRULENCE_Ecoli papG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin -papH VIRULENCE_Ecoli papH - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial minor subunit PapH -pcoA multi_Cu_ox pcoA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER multicopper oxidase PcoA -pcoB METAL pcoB - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-binding protein PcoB -pcoC copC pcoC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance system metallochaperone PcoC -pcoD copD pcoD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance inner membrane protein PcoD -pcoE METAL pcoE - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance system metallochaperone PcoE -pcoR copR_gen pcoR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper response regulator transcription factor PcoR -pcoS METAL pcoS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance membrane spanning protein PcoS -penA-A_Burk bla-A penA NF000320.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PenA family class A beta-lactamase -penI_Bp bla-A penI NF000321.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PenI family class A extended-spectrum beta-lactamase -perA VIRULENCE_Ecoli perA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE BFP system transcriptional regulator PerA -pet auto_tox pet - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Pet -pexA MFS_efflux pexA NF000072.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL PHENICOL phenicol efflux MFS transporter PexA -pfoA VIRULENCE_Cperf pfoA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cholesterol-dependent cytolysin perfringolysin O -pic_auto auto_tox pic - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Pic -pilus VIRULENCE_Ecoli pil - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE type IV pilus protein -pmrA MFS_efflux pmrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR QUINOLONE QUINOLONE multidrug efflux MFS transporter PmrA -pmrC_gen AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR phosphoethanolamine--lipid A transferase -poxtA abc-f poxtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein PoxtA -qacA MFS_efflux_qac qacA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux MFS transporter QacA -qacB MFS_efflux_qac qacB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux MFS transporter QacB -qacCGHJ SMR_efflux qac NF000384.1 160.00 160.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacCGHJ group quaternary ammonium compound efflux SMR transporter -qacC qacCGHJ qacC NF000023.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacC -qacE_gen SMR_qac_int qacE NF000276.2 185.00 185.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacE -qacE qacE_gen qacE - 0.00 0.00 97.00 99.00 99.00 97.00 99.00 99.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacE -qacF qac_F_L qacF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacF -qacG2 SMR_qac_int qacG2 NF000278.1 220.00 220.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacG2 -qacG qacCGHJ qacG NF000277.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacG -qacH_Lis SMR_efflux qacH - 0.00 0.00 80.00 90.00 90.00 80.00 90.00 25.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH -qacH qacCGHJ qacH NF000279.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH -qacJ qacCGHJ qacJ NF012170.0 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacJ -qacK SMR_qac_int qacK NF033136.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacK -qacL qac_F_L qacL - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacL -qacR BIOCIDE qacR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM multidrug-binding transcriptional regulator QacR -qacZ qacH qacZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH -qac_F_L SMR_qac_int qac NF000067.2 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacF/QacL family quaternary ammonium compound efflux SMR transporter -qepA MFS_efflux qepA NF012169.0 1075.00 1075.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE fluoroquinolone efflux MFS transporter QepA -qnrAS qnr qnrAS NF012151.0 490.00 490.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrAS family quinolone resistance pentapeptide repeat protein -qnrA qnr qnrA NF000071.4 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrA family quinolone resistance pentapeptide repeat protein -qnrB qnr qnrB NF000420.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrB family quinolone resistance pentapeptide repeat protein -qnrC qnr qnrC NF012152.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrC family quinolone resistance pentapeptide repeat protein -qnrD qnr qnrD NF000139.2 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrD family quinolone resistance pentapeptide repeat protein -qnrE qnr qnrE NF033375.2 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrE family quinolone resistance pentapeptide repeat protein -qnrS qnr qnrS NF000056.3 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrS family quinolone resistance pentapeptide repeat protein -qnrVC qnr qnrVC NF000421.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrVC family quinolone resistance pentapeptide repeat protein -qnr AMR qnr - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR Qnr family pentapeptide repeat protein -ranA EFFLUX ranA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR multidrug efflux ABC transporter ATP-binding subunit RanA -ranB EFFLUX ranB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR multidrug efflux ABC transporter permease subunit RanB -rcnA_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL Ni(II)/Co(II) efflux transporter permease subunit -rgt1438 rgt rgt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN Rgt1438 family rifamycin-inactivating glycosyltransferase -rgt AMR rgt NF000354.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating glycosyltransferase Rgt -rho-1 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho -rho-2 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN YPSILON intimin type ypsilon -rho-3 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho -rho eae_typing_E._coli eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho -rlmA(II)_gen AMR rlmA(II) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase -rmpA2 VIRULENCE rmpA2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpA2 -rmpA VIRULENCE rmpA - 0.00 0.00 89.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpA -rmpC VIRULENCE rmpC - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpC -rmpD VIRULENCE rmpD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype synthesis protein RmpD -rmtA rmt rmtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtA family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtB rmt rmtB NF033209.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtB family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtC rmt rmtC NF000150.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtC family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtD rmt rmtD NF000007.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtD family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtE rmt rmtE NF000069.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtE family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtF rmt rmtF NF000113.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtF family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtG rmt rmtG NF000114.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtG family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmtH rmt rmtH NF000116.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtH family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rmt AMR rmt NF000466.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE Rmt family 16S rRNA (guanine(1405)-N(7))-methyltransferase -rox_gen AMR rox NF033145.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase -rox rox_gen rox - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase Rox -rpeA auto_tox rpeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter colonization factor RpeA -rphC rph_gen rphC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase RphC -rphD rph_gen rphD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase RphD -rph_gen AMR rph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase -rph rph_gen rph NF000283.1 1700.00 1700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase Rph -saa VIRULENCE_Ecoli saa - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE autoagglutinating adhesin Saa -sab VIRULENCE_Ecoli sab - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE autotransporter adhesin Sab -sak VIRULENCE_Saur sak - 0.00 0.00 90.00 50.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylokinase -sal(A) sal sal(A) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Sal(A) -sal abc-f sal NF000169.1 1050.00 1050.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN Sal family ABC-F type ribosomal protection protein -sat2_fam sat sat2 NF000358.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat2 -sat3 sat sat3 NF000359.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat3 -sat4 sat sat4 NF000360.1 380.00 380.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat4 -satA_Bant sat satA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase SatA -satA_Bsub sat satA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase SatA -sat_auto auto_tox sat - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Sat -sat AMR sat - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase -scn VIRULENCE_Saur scn - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE complement inhibitor SCIN-A -sdeA BIOCIDE sdeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit SdeA -sdeB RND-IM sdeB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit SdeB -sdeY RND-IM sdeY - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit SdeY -sea VIRULENCE_Saur sea - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type A -seb VIRULENCE_Saur seb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type B -sec1 VIRULENCE_Saur sec1 - 0.00 0.00 98.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C1 -sec2 VIRULENCE_Saur sec2 - 0.00 0.00 98.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C2 -sec3 VIRULENCE_Saur sec3 - 0.00 0.00 96.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C3 -sed VIRULENCE_Saur sed - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type D -see VIRULENCE_Saur see - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type E -seh VIRULENCE_Saur seh - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type H -sei VIRULENCE_Saur sei - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type I -sej VIRULENCE_Saur sej - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type J -sek VIRULENCE_Saur sek - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type K -sel26 VIRULENCE_Saur sel26 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 26 -sel27 VIRULENCE_Saur sel27 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 27 -sel28 VIRULENCE_Saur sel28 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 28 -sel30 VIRULENCE_Saur sel30 - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 30 -sel31 VIRULENCE_Saur sel31 - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 31 -sel32 VIRULENCE_Saur sel32 - 0.00 0.00 97.00 90.00 90.00 97.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 32 -sel33 VIRULENCE_Saur sel33 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 33 -selV VIRULENCE_Saur selV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type V -selX VIRULENCE_Saur selX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin-like toxin X -selZ VIRULENCE_Saur selZ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Z -sel VIRULENCE_Saur sel - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type L -sem VIRULENCE_Saur sem - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type M -senB VIRULENCE_Ecoli senB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE enterotoxin production-related protein TieB -sen VIRULENCE_Saur sen - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type N -seo VIRULENCE_Saur seo - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type O -sepA auto_tox sepA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin SepA -sep VIRULENCE_Saur sep - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type P -sequest AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein -seq VIRULENCE_Saur seq - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Q -ser VIRULENCE_Saur ser - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type R -ses VIRULENCE_Saur ses - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type S -set VIRULENCE_Saur set - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type T -seu VIRULENCE_Saur seu - 0.00 0.00 91.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type U -sey VIRULENCE_Saur sey - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Y -sfaF VIRULENCE_Ecoli sfaF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE S/F1C fimbrial biogenesis usher protein SfaF/FocD -sfaS VIRULENCE_Ecoli sfaS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE S-fimbrial adhesin minor subunit SfaS -sgm rmt sgm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN Sgm family 16S rRNA (guanine(1405)-N(7))-methyltransferase -sigA auto_tox sigA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin SigA -silA METAL-RND-IM silA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter permease subunit SilA -silB cusB_gen silB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB -silC METAL silC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC -silE METAL silE - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS METAL SILVER SILVER silver-binding protein SilE -silF METAL silF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF -silP P-type_ATPase silP - 0.00 0.00 84.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL SILVER SILVER Ag(+)-translocating P-type ATPase SilP -silR copR_gen silR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver response regulator transcription factor SilR -silS METAL silS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver sensor histidine kinase SilS -sinH VIRULENCE_Ecoli sinH NF033423.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE intimin-like inverse autotransporter SinH -smdA BIOCIDE smdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux ABC transporter permease/ATP-binding subunit SmdA -smdB BIOCIDE smdB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux ABC transporter permease/ATP-binding subunit SmdB -smeF RND-OM smeF - 0.00 0.00 84.00 90.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane subunit SmeF -smfY MFS_efflux smfY - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter SmfY -spd ant(9) spd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase Spd -splA VIRULENCE_Saur splA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplA -splB VIRULENCE_Saur splB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplB -splE VIRULENCE_Saur splE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplE -spw ant(9) spw - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase Spw -srm(B) abcf-produ srm(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Srm(B) -srpA RND-peri srpA - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter periplasmic adaptor subunit SrpA -srpB RND-IM srpB - 0.00 0.00 89.00 90.00 90.00 93.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter permease subunit SrpB -srpC RND-OM ttgI - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter outer membrane subunit SrpC -srpR BIOCIDE srpR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX solvent efflux transporter antirepressor SrpR -srpS BIOCIDE srpS - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX solvent efflux transporter transcriptional repressor SrpS -sslE VIRULENCE_Ecoli sslE NF037973.1 3000.00 3000.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE lipoprotein metalloprotease SslE -ssmE SMR_efflux ssmE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux SMR transporter SsmE -sta1 VIRULENCE_Ecoli sta1 - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin ST-I group a -sta sat sta NF000487.1 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase STAT -stb VIRULENCE_Ecoli stb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin ST-II -str ant(6) str NF000062.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN streptomycin adenylyltransferase Str -stxA1a stxA1 stxA1a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1A Shiga toxin Stx1a subunit A -stxA1c stxA1 stxA1c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1C Shiga toxin Stx1c subunit A -stxA1d stxA1 stxA1d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1D Shiga toxin Stx1d subunit A -stxA1 stxA stxA1 NF033658.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1 Shiga toxin Stx1 subunit A -stxA2a stxA2 stxA2a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2A Shiga toxin Stx2a subunit A -stxA2b stxA2 stxA2b - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2B Shiga toxin Stx2b subunit A -stxA2c stxA2 stxA2c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2C Shiga toxin Stx2c subunit A -stxA2d stxA2 stxA2d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2D Shiga toxin Stx2d subunit A -stxA2e stxA2 stxA2e - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2E Shiga toxin Stx2e subunit A -stxA2f stxA2 stxA2f - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2F Shiga toxin Stx2f subunit A -stxA2g stxA2 stxA2g - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2G Shiga toxin Stx2g subunit A -stxA2 stxA stxA2 NF033661.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2 Shiga toxin Stx2 subunit A -stxA stx stxA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin subunit A -stxB1a stxB1 stxB1a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1A Shiga toxin Stx1a subunit B -stxB1c stxB1 stxB1c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1C Shiga toxin Stx1c subunit B -stxB1d stxB1 stxB1d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1D Shiga toxin Stx1d subunit B -stxB1 stxB stxB1 NF033659.0 175.00 175.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1 Shiga toxin Stx1 subunit B -stxB2a stxB2 stxB2a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2A Shiga toxin Stx2a subunit B -stxB2b stxB2 stxB2b - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2B Shiga toxin Stx2b subunit B -stxB2c stxB2 stxB2c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2C Shiga toxin Stx2c subunit B -stxB2d stxB2 stxB2d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2D Shiga toxin Stx2d subunit B -stxB2e stxB2 stxB2e - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2E Shiga toxin Stx2e subunit B -stxB2f stxB2 stxB2f - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2F Shiga toxin Stx2f subunit B -stxB2g stxB2 stxB2g - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2G Shiga toxin Stx2g subunit B -stxB2 stxB stxB2 NF033660.0 165.00 165.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2 Shiga toxin Stx2 subunit B -stxB stx stxB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin subunit B -stx VIRULENCE_Ecoli stx - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin -subA VIRULENCE_Ecoli subA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE subtilase AB5 cytotoxin subunit A -subB VIRULENCE_Ecoli subB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE subtilase AB5 cytotoxin subunit B -sul1 sul sul1 NF000294.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul1 -sul2 sul sul2 NF000295.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul2 -sul3 sul sul3 NF000296.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul3 -sul4 sul sul4 NF033502.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul4 -sulR AMR sulR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE flavin reductase SulR -sulX AMR sulX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide monooxygenase SulX -sul AMR sul - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase -taeA abc-f taeA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PLEUROMUTILIN TIAMULIN ABC-F type ribosomal protection protein TaeA -tbtA RND-peri tbtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit TbtA -tbtB RND-IM tbtB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TbtB -tbtM adeC-K-oprM tbtM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane channel subunit TbtM -tbtR BIOCIDE tbtR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX tribuytltin resistance regulator TbtR -tccP2 VIRULENCE_Ecoli tccP - 0.00 0.00 94.00 80.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Tir-cytoskeleton coupling protein TccP2 -tccP VIRULENCE_Ecoli tccP - 0.00 0.00 94.00 80.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Tir-cytoskeleton coupling protein TccP -tcdA tcd_gen tcdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TcdA -tcdB tcd_gen tcdB - 0.00 0.00 85.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TcdB -tcdC VIRULENCE_Cdiff tcdC - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin anti-sigma factor TcdC -tcdE VIRULENCE_Cdiff tcdE - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE holin-like glycosylating toxin export protein TcdE -tcdR VIRULENCE_Cdiff tcdR - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin sigma factor TcdR -tcd_gen VIRULENCE_Cdiff - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE glycosylating toxin -tcmA MFS_efflux tcmA NF000025.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACENOMYCIN TETRACENOMYCIN tetracenomycin C efflux MFS transporter -tcr3 tet_MFS_efflux tcr3 NF000009.1 1000.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tcr3 -tcrB P-type_ATPase tcrB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-translocating P-type ATPase TcrB -terB METAL terB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerB -terC METAL terC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerC -terD METAL terD - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerD -terE METAL terE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance cAMP binding protein TerE -terW METAL terW - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance protein TerW -terZ METAL terZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance-associated protein TerZ -tet(30) tet_A_B_C_D tet(30) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(30) -tet(31) tet_A_B_C_D tet(31) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(31) -tet(32) tet(M-W-O-S) tet(32) - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 75.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(32) -tet(33) tet_A_B_C_D tet(33) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(33) -tet(34) tet tet(34) NF000014.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) -tet(35) tet tet(35) NF000013.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux Na+/H+ antiporter family transporter Tet(35) -tet(36) tet_rib_protect tet(36) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(36) -tet(37) tet tet(37) NF000059.1 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance NADPH-dependent oxidoreductase Tet(37) -tet(38) tet_MFS_efflux tet(38) NF012176.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(38) -tet(39) tet_A_B_C_D tet(39) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(39) -tet(40) tet_MFS_efflux tet(40) NF000049.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(40) -tet(41) tet_A_B_C_D tet(41) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(41) -tet(42) tet_MFS_efflux tet(42) NF012177.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(42) -tet(43) tet_MFS_efflux tet(43) NF012180.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(43) -tet(44) tet(M-W-O-S) tet(44) - 0.00 0.00 93.00 90.00 90.00 94.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(44) -tet(45) tet_L_K_45 tet(45) NF012184.0 975.00 975.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(45) -tet(47) tet_destruct tet(47) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(47) -tet(48) tet_destruct tet(48) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(48) -tet(49) tet_destruct tet(49) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(49) -tet(50) tet_destruct tet(50) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(50) -tet(51) tet_destruct tet(51) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(51) -tet(52) tet_destruct tet(52) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(52) -tet(53) tet_destruct tet(53) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(53) -tet(54) tet_destruct tet(54) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(54) -tet(55) tet_destruct tet(55) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(55) -tet(56) tet_destruct tet(56) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(56) -tet(57) tet_A_B_C_D tet(57) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(57) -tet(59) tet_A_B_C_D tet(59) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(59) -tet(62) tet_A_B_C_D tet(62) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(62) -tet(63) tet_L_K_45 tet(63) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(63) -tet(64) tet_A_B_C_D tet(64) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(64) -tet(A) tet_A_B_C_D tet(A) NF012193.0 840.00 840.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(A) -tet(B) tet_A_B_C_D tet(B) NF012190.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(B) -tet(C) tet_A_B_C_D tet(C) NF012191.0 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(C) -tet(D) tet_A_B_C_D tet(D) NF012186.0 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(D) -tet(E) tet_A_B_C_D tet(E) NF012187.0 820.00 820.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(E) -tet(G) tet_A_B_C_D tet(G) NF012192.0 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(G) -tet(H) tet(H-J) tet(H) NF012195.0 840.00 840.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(H) -tet(H-J) tet_A_B_C_D tet(H-J) NF012207.0 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(H)/Tet(J) family tetracycline efflux MFS transporter -tet(J) tet(H-J) tet(J) NF012194.0 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(J) -tet(K) tet_L_K_45 tet(K) NF012183.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(K) -tet(L) tet_L_K_45 tet(L) NF012185.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(L) -tet(M) tet(M-W-O-S) tet(M) NF012155.1 1420.00 1420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(M) -tet(M-W-O-S) tet_rib_protect tet_rib_protect NF033148.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein -tet(O) tet(M-W-O-S) tet(O) - 0.00 0.00 91.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(O) -tet(O/32/O) tet(M-W-O-S) tet(O/32/O) - 0.00 0.00 97.50 95.00 95.00 97.50 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/32/O) -tet(O/M/O) tet(M-W-O-S) tet(O/M/O) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/M/O) -tet(O/W) tet(M-W-O-S) tet(O/W) - 0.00 0.00 99.00 98.00 98.00 99.00 98.00 98.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W) -tet(O/W/32/O) tet(M-W-O-S) tet(O/W/32/O) - 0.00 0.00 97.00 95.00 95.00 98.00 95.00 85.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) -tet(O/W/O) tet(M-W-O-S) tet(O/W/O) - 0.00 0.00 97.50 95.00 95.00 97.50 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W/O) -tet(Q) tet_rib_protect tet(Q) NF012154.0 1425.00 1425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(Q) -tet(S) tet(M-W-O-S) tet(S) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(S) -tet(T) tet_rib_protect tet(T) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(T) -tet(V) tet_MFS_efflux tet(V) NF012178.0 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(V) -tet(W) tet(M-W-O-S) tet(W) - 0.00 0.00 94.00 90.00 90.00 97.00 90.00 75.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(W) -tet(W/32/O) tet(M-W-O-S) tet(W/32/O) - 0.00 0.00 99.00 97.00 97.00 99.00 97.00 97.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(W/32/O) -tet(W/N/W) tet(M-W-O-S) tet(W/N/W) - 0.00 0.00 96.00 95.00 95.00 96.00 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(W/N/W) -tet(X) tet tet(X) NF033111.2 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X) -tet(X1) tet(X) tet(X1) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X1) -tet(X2) tet(X) tet(X2) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X2) -tet(X3) tet(X) tet(X3) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X3) -tet(X4) tet(X) tet(X4) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X4) -tet(X5) tet(X) tet(X5) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X5) -tet(Y) tet_A_B_C_D tet(Y) NF012188.1 820.00 820.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(Y) -tet(Z) tet_A_B_C_D tet(Z) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(Z) -tetA(46) tet tetA(46) NF000474.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(46) subunit A -tetA(58) tet tetA(58) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(58) subunit A -tetA(60) tet tetA(60) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(60) subunit A -tetA(D) tet_A_B_C_D tetA(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(D)-related tetracycline efflux MFS transporter -tetA(P) tet_MFS_efflux tetA(P) NF000043.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter TetA(P) -tetAB_A tetAB tetA NF000506.1 1025.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB subunit A -tetAB_B tetAB tetAB_B NF000103.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB subunit B -tetAB tet tetAB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB -tetB(46) tet tetB(46) NF000475.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(46) subunit B -tetB(58) tet tetB(58) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(58) subunit B -tetB(60) tet tetB(60) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(60) subunit B -tetB(P) tet_rib_protect tetB(P) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein TetB(P) -tet_A_B_C_D tet_MFS_efflux tet NF012174.0 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter -tet_L_K_45 tet_MFS_efflux tet NF012175.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(L)/Tet(K)/Tet(45) family tetracycline efflux MFS transporter -tet_MFS_efflux MFS_efflux tet - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter -tet_destruct tet tet NF033476.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase -tet_rib_protect tet tet NF012153.1 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein -tet AMR tet - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance protein -tir VIRULENCE_Ecoli tir NF033637.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocated intimin receptor Tir -tlmB blmB_tlmB tlmB NF000485.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase TlmB -tlr(C) abcf-produ tlr(C) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Tlr(C) -tmexC RND-peri tmexC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux RND transporter periplasmic adaptor subunit TMexC -tmexD RND-IM tmexD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux RND transporter permease subunit TMexD -toprJ RND-OM toprJ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux transporter outer membrane subunit TOprJ -toxB VIRULENCE_Ecoli toxB - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE toxin B -tpeL VIRULENCE_Cperf tpeL - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TpeL -tsh hbp_auto tsh - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE temperature-sensitive protease autotransporter hemagglutinin Tsh -tsnR nshR_tsnR tsnR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON 23S rRNA (adenine(1067)-N)-methyltransferase TsnR -tst VIRULENCE_Saur tst - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE toxic shock syndrome toxin TSST-1 -ttgA RND-peri ttgA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX toluene efflux RND transporter periplasmic adaptor subunit TtgA -ttgB RND-IM ttgB - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TtgB -ttgD RND-peri ttgD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX toluene efflux RND transporter periplasmic adaptor subunit TtgD -ttgE RND-IM ttgE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TtgE -ttgR BIOCIDE ttgR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX efflux transport transcriptional regulator TtgR -ttgT BIOCIDE ttgT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX efflux transport transcriptional regulator TtgT -tva(A) abc-f tva(A) - 0.00 0.00 88.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR PLEUROMUTILIN PLEUROMUTILIN/STREPTOGRAMIN ABC-F type ribosomal protection protein Tva(A) -tva(B) abc-f tva(B) - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 2 AMR AMR PLEUROMUTILIN PLEUROMUTILIN/STREPTOGRAMIN ABC-F type ribosomal protection protein Tva(B) -vac_auto auto_tox vactox - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE vacuolating autotransporter toxin Vat -vanA-Ao2 vanA-all vanA-Ao2 NF000092.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Ao2 -vanA-Pa vanA-all vanA-Pa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pa -vanA-Pt2 vanA-all vanA-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pt2 -vanA-Pt vanA-all vanA-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pt -vanA-Sc vanA-all vanA-Sc NF000129.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Sc -vanA-all AMR vanA NF000206.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase -vanA vanA-all vanA NF012217.1 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA -vanB vanA-all vanB NF012216.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanB -vanC-all AMR vanC NF000207.3 520.00 520.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase -vanC1 vanC vanC NF012213.0 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC1 -vanC2/3 vanC vanC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC2/3 -vanC vanC-all vanC NF012214.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC -vanD vanA-all vanD NF012215.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanD -vanE vanC-all vanE NF000036.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanE -vanF vanA-all vanF NF000144.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanF -vanG-Cd vanG vanG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG-Cd -vanG2 vanG vanG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG2 -vanG AMR vanG NF000091.3 495.00 495.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG -vanH-Ac1 vanH-Amyco vanH-Ac1 NF000151.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ac1 -vanH-Amyco vanH vanH NF000112.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanH-AOV family D-lactate dehydrogenase -vanH-Ao1 vanH-Amyco vanH-Ao1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ao1 -vanH-Ao2 vanH-Amyco vanH-Ao2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ao2 -vanH-A vanH_group_A_Pt vanH-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-A -vanH-B vanH vanH-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-B -vanH-D vanH vanH-D NF000004.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-D -vanH-F vanH vanH-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-F -vanH-M vanH vanH-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-M -vanH-O vanH vanH-O - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-O -vanH-Pt2 vanH_group_A_Pt vanH-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Pt2 -vanH-Pt vanH_group_A_Pt vanH-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Pt -vanH-Sc vanH vanH-Sc NF000128.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Sc -vanH_group_A_Pt vanH vanH NF000371.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanH-A/VanH-Pt family D-lactate dehydrogenase -vanH AMR vanH NF000492.1 540.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH -vanI vanA-all vanI NF000372.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanI -vanJ AMR vanJ NF000373.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN teicoplanin resistance protein VanJ -vanK-I vanK vanK-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN peptidoglycan bridge formation peptidyltransferase VanK-I -vanK-Sc vanK vanK-Sc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN peptidoglycan bridge formation peptidyltransferase VanK-Sc -vanK AMR vanK - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanK family peptidoglycan bridge formation peptidyltransferase -vanL vanC-all vanL NF000032.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanL -vanM vanA-all vanM NF000470.1 760.00 760.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanM -vanN vanC-all vanN NF000093.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanN -vanO vanA-all vanO NF000374.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanO -vanR-ABDEGLN vanR_gen vanR NF033117.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanR-ABDEGLN family response regulator transcription factor -vanR-A vanR-ABDEGLN vanR-A NF000401.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanA-type vancomycin resistance DNA-binding response regulator VanR -vanR-B vanR_gen vanR-B NF000402.1 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanB-type vancomycin resistance response regulator transcription factor VanR -vanR-Cd vanR-ABDEGLN vanR-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-Cd-type vancomycin resistance DNA-binding response regulator VanR -vanR-C vanR-ABDEGLN vanR-C NF000403.1 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanC-type vancomycin resistance DNA-binding response regulator VanR -vanR-D vanR-ABDEGLN vanR-D NF000404.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanD-type vancomycin resistance DNA-binding response regulator VanR -vanR-E vanR-ABDEGLN vanR-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanE-type vancomycin resistance DNA-binding response regulator VanR -vanR-FM vanR_gen vanR NF033120.0 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanR-FM family response regulator transcription factor -vanR-F vanR-FM vanR-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanF-type vancomycin resistance DNA-binding response regulator VanR -vanR-G vanR-ABDEGLN vanR-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-type vancomycin resistance DNA-binding response regulator VanR -vanR-I vanR-ABDEGLN vanR-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanI-type vancomycin resistance DNA-binding response regulator VanR -vanR-L vanR-ABDEGLN vanR-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanL-type vancomycin resistance DNA-binding response regulator VanR -vanR-M vanR-FM vanR-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanM-type vancomycin resistance DNA-binding response regulator VanR -vanR-N vanR-ABDEGLN vanR-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanN-type vancomycin resistance DNA-binding response regulator VanR -vanR-O vanR_gen vanR-O NF033118.1 505.00 505.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanO-type vancomycin resistance response regulator transcription factor VanR -vanR-Sc vanR_gen vanR-Sc - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanSc-type vancomycin resistance response regulator transcription factor VanR -vanR_gen RESPONSE_REG vanR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance response regulator transcription factor VanR -vanS-A vanS_ACDEFG vanS-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanA-type vancomycin resistance histidine kinase VanS -vanS-B vanS_gen vanS-B NF033090.1 920.00 920.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanB-type vancomycin resistance histidine kinase VanS -vanS-Cd vanS_ACDEFG vanS-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-Cd-type vancomycin resistance histidine kinase VanS -vanS-C vanS_ACDEFG vanS-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanC-type vancomycin resistance histidine kinase VanS -vanS-D vanS_ACDEFG vanS-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanD-type vancomycin resistance histidine kinase VanS -vanS-E vanS_ACDEFG vanS-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanE-type vancomycin resistance histidine kinase VanS -vanS-F vanS_ACDEFG vanS-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanF-type vancomycin resistance histidine kinase VanS -vanS-G vanS_ACDEFG vanS-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-type vancomycin resistance histidine kinase VanS -vanS-L vanS_ACDEFG vanS-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanL-type vancomycin resistance histidine kinase VanS -vanS-M vanS_ACDEFG vanS-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanM-type vancomycin resistance histidine kinase VanS -vanS-N vanS_ACDEFG vanS-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanN-type vancomycin resistance histidine kinase VanS -vanS-O vanS_gen vanS-O NF033094.0 720.00 720.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanO-type vancomycin resistance histidine kinase VanS -vanS-Pt2 vanS_ACDEFG vanS-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanPt2-type vancomycin resistance histidine kinase VanS -vanS-Pt vanS_ACDEFG vanS-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanPt-type vancomycin resistance histidine kinase VanS -vanS-Sc vanS_gen vanS-Sc - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanSc-type vancomycin resistance histidine kinase VanS -vanS_ACDEFG vanS_gen vanS NF033091.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance histidine kinase VanS -vanS_gen AMR vanS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance histidine kinase VanS -vanT-Cd vanT-G_fam vanT-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-Cd -vanT-C vanT_CELN vanT-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-C -vanT-E vanT_CELN vanT-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-E -vanT-G_fam vanT_all vanT NF033131.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanT-G-like membrane-bound serine racemase -vanT-G vanT-G_fam vanT-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-G -vanT-N vanT_CELN vanT-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-N -vanT_CELN vanT_all vanT NF033132.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT -vanT_all AMR vanT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT -vanTc2 vanT_CELN vanTc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT -vanTc3 vanT_CELN vanTc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT -vanTm-L vanT_all vanTm NF000033.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN serine racemase VanT-L membrane subunit -vanTr-L vanT_all vanTr NF033133.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN serine racemase VanT-L catalytic subunit -vanU-G vanU vanU-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance transcriptional regulator VanU-G -vanU AMR vanU NF000090.1 150.00 150.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance transcriptional regulator VanU -vanW-B vanW vanW-B NF033122.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-B -vanW-G vanW vanW-G NF033123.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-G -vanW-I vanW vanW-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-I -vanW-Pt vanW vanW-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-Pt -vanW AMR vanW NF033128.2 365.00 365.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW -vanX-Ac1 vanX vanX-Ac1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ac1 -vanX-Ao1 vanX vanX-Ao1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ao1 -vanX-Ao2 vanX vanX-Ao2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ao2 -vanX-A vanX vanX-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-A -vanX-B vanX vanX-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-B -vanX-D vanX vanX-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-D -vanX-F vanX vanX-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-F -vanX-I vanX vanX-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-I -vanX-M vanX vanX-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-M -vanX-O vanX vanX-O - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-O -vanX-Pt vanX vanX-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Pt -vanX-Sc vanX vanX-Sc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Sc -vanXY-C vanXY vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C -vanXY-E vanXY vanXY-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-E -vanXY-G2 vanXY-G_fam vanXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G2 -vanXY-G_fam vanXY vanXY NF000149.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G -vanXY-G vanXY-G_fam vanXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G -vanXY-L vanXY vanXY-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-L -vanXY-N vanXY vanXY-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-N -vanXY-c2/3 vanXY-C vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C -vanXY-c4 vanXY-C vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C -vanXY AMR vanXY NF000380.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D,D-carboxypeptidase/D,D-dipeptidase VanXY -vanX AMR vanX NF033115.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX -vanY-A vanY_AFMPt vanY-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-A -vanY-B vanY_BG vanY-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-B -vanY-D AMR vanY-D NF000471.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN transpeptidase-like D-Ala-D-Ala carboxypeptidase VanY-D -vanY-F vanY_AFMPt vanY-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-F -vanY-G1 vanY_BG vanY-G1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-G1 -vanY-G vanY_BG vanY-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-G -vanY-N vanY vanY-N NF000086.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D,D-peptidase/D,D-carboxypeptidase VanY-N -vanY-Pt vanY_AFMPt vanY-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-Pt -vanY_AFMPt vanY vanY NF000472.1 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase -vanY_BG vanY vanY NF000473.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanY-B/VanY-G family D-Ala-D-Ala carboxypeptidase -vanY AMR vanY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY -vanZ-A vanZ vanZ-A NF033125.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-A -vanZ-F vanZ vanZ-F NF000145.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-F -vanZ-Pt vanZ vanZ-Pt NF000142.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-Pt -vanZ1 vanZ vanZ1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ1 -vanZ AMR vanZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ -varG bla-B varG NF033574.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VarG family subclass B1-like metallo-beta-lactamase -vat(A) vat vat(A) NF000101.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(A) -vat(B) vat vat(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(B) -vat(C) vat vat(C) NF000097.1 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(C) -vat(D) vat vat(D) NF000111.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(D) -vat(E) vat vat(E) NF000020.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(E) -vat(F) vat vat(F) NF000147.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(F) -vat(H) vat vat(H) NF000504.1 475.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(H) -vat(I) vat vatI NF033468.1 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(I) -vat AMR vat NF000311.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN Vat family streptogramin A O-acetyltransferase -vga(A) vga vga(A) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(A) -vga(B) vga vga(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(B) -vga(C) vga vga(C) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(C) -vga(D) vga vga(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(D) -vga(E) vga vga(E) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(E) -vga abc-f vga NF000170.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Vga family ABC-F type ribosomal protection protein -vgb(A) vgb vgb(A) NF000022.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(A) -vgb(B) vgb vgb(B) NF000096.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(B) -vgb(C) vgb vgbC - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(C) -vgb AMR vgb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase -virF VIRULENCE_Ecoli virF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AraC family invasion system transcriptional regulator VirF -vmlR abc-f vmlR - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR MACROLIDE/PLEUROMUTILIN LINCOSAMIDE/STREPTOGRAMIN/TIAMULIN ABC-F type ribosomal protection protein VmlR -vph AMR vph NF000088.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TUBERACTINOMYCIN VIOMYCIN viomycin phosphotransferase -ybtP VIRULENCE ybtP - 0.00 0.00 85.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE yersiniabactin ABC transporter ATP-binding/permease protein YbtP -ybtQ VIRULENCE ybtQ - 0.00 0.00 85.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE yersiniabactin ABC transporter ATP-binding/permease protein YbtQ -yfeA VIRULENCE yfeA - 0.00 0.00 83.00 90.00 90.00 88.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter substrate-binding protein YfeA -yfeB VIRULENCE yfeB - 0.00 0.00 86.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter ATP-binding protein YfeB -yfeD VIRULENCE yfeD - 0.00 0.00 88.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter permease subunit YfeD -zbmA ble zbmA NF000479.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN ZORBAMYCIN zorbamycin binding protein ZbmA
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/taxgroup.tab Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -#taxgroup gpipe_taxgroup number_of_nucl_ref_genes -Acinetobacter_baumannii Acinetobacter 0
--- a/test-data/tmp/test-db/amrfinderplus-db/2021-09-30.1/version.txt Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -2021-09-30.1
--- a/test-data/tmp/test-db/oric.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->ORI10010001 -TATTCTTCTATAACATTGTCAAGAATGATAGTTAAAATTCTCGAAATTGGGATATTAACTGCTTTGGAGTAATTTCTAACTTTTTGTCATACTCTTTGACTTGTATAGAAGTGTACACCTGTATCTAGTTTTTCTTGGCGTTCAACAGGAACTATTCCTGGTATTTTTGTTTTAGGTTGGGGAGGAATAGGCTGTGGTTGTGTGAATTGTTGTTGAAAATTTTGATTTTTTTGCTGTAAGAAACCATTATTATGATATTGAAAATTTTGTTCCTCTTGAAAATATCTCTCTTTTTTTGGTTTTCCAGAAAAATTTGATGAAAAAGATTTTTCTTCATTTCAATTTTCAAGATTATTTTCATTTTGTTGATTTATTTGCTCAGGCTGTTGAAATGAATTATTTTTTGATCAAAAAGATTTTGGAAAGGTTTTTTCAAAAGCAGATAAAGGTCCAAAATCAAATGAAGATGAATCTTTGTCAAAAGATGTTTCTTCTCTTTTTGACAAATTTTGTTTTTGATTAAACTTATTTTTATTTTGGGGTGTTACTTTTTCTTTTATGGAAAACAAATCTTCTTCTAAAAGACTTTGTTCTGGGTCATCATCTTGTGCTAAATCAAAGAAAAAACGTTTCTTTTTGTTA ->ORI10010003 -GGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACT
--- a/test-data/tmp/test-db/orit.fna Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->CP019995|MOBP -GTAGAATCGTTTAGTATGAGAATAGAAAACCAACGGTTTTCATGAACTTACTAAACGATTCTAC ->CP012386|MOBP -AGAACAATCAACAACTAATTAGGCAAATTAAGGGGTGCTAAACAACTGCTAGTAGGTGCTAGAGATGTGCTATAAAGGGTGCTAGTTTGGTGCTAGTTACTGCTAAATACGTGCTAGTTTAGGTGCTAGAAACGTGCTATATGGTGCTAAAAAGGTGCTAGTTTGCATGAAGTTACCTGCTAGCCAAGTGCTAGTGGCGTTCGTTTTTGGGTCCCACGGGAAAGCCTTGCACTGCAAGGCGGGTCAGCTTGTCTGACCCCCATTTCCCCTTATGCTCTTCCGAAACACAAAGCGCAATTAAGCGAATACTAGAGAATAAATA
--- a/test-data/tmp/test-db/rfam-go.tsv Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -Rfam:RF00001 GO:0003735
--- a/test-data/tmp/test-db/version.json Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,53 +0,0 @@ -{ - "date": "2021-08-9", - "major": 3, - "minor": 0, - "dependencies": [ - { - "name": "AMRFinderPlus", - "release": "2020-09-22.2" - }, - { - "name": "COG", - "release": "2014" - }, - { - "name": "DoriC", - "release": "10" - }, - { - "name": "ISFinder", - "release": "2019-09-25" - }, - { - "name": "Mob-suite", - "release": "2.0" - }, - { - "name": "Pfam", - "release": "33.1" - }, - { - "name": "RefSeq", - "release": "r202" - }, - { - "name": "Rfam", - "release": "14.2" - }, - { - "name": "UniProtKB/Swiss-Prot", - "release": "2020_04" - } - ], - "experts": [ - { - "name": "AMRFinderPlus", - "release": "3.10.1" - }, - { - "name": "NCBI BlastRules", - "release": "4.0" - } - ] -}
--- a/test-data/tmp/test_database.loc Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -# Tab separated with 4 columns: -# - value (Galaxy records this in the Galaxy DB) -# - name (Galaxy shows this in the UI) -# - path (folder name containing the NCBI DB) -test-db-bakta "Database test" ${__HERE__}/test-db
--- a/test-data/tmp/user-proteins.faa Thu Sep 01 17:28:43 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ ->VFDB_test 90~~~90~~~90~~~yaxA~~~cytotoxin YaxA~~~VFDB:VFG045347,VFDB:VF0511,EC:1.1.1.1,EC:2.2.2.2 -MTQTQLAIDNVLASAENTIQLNELPKVVLDFITGEQTSVARSGGIFTKEDLINLKLYVRKGLSLPTRQDEVEAYLGYKKIDVAGLEPKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLRDITDKQLENITYESADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSNMRKSIKELDEKIKEKKQRIEQLKKDYDKFVGLSFTGAIGGIIAMAITSGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAMINNALRLTSFVNKFQQVITPWQSVGDSARQLVDIFDEAIKEYKKVYG ->hypo-mock-test 99~~~99~~~99~~~mock1~~~mock hypothetical user protein 1~~~USERDB:MOCK1,EC:0.0.0.0 -MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYKGIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDRANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIASLINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSLIMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREIHQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGGVARLKL \ No newline at end of file