# HG changeset patch
# User iuc
# Date 1673612294 0
# Node ID 5325e44297b950223e2b3c92d22ac02f48a79290
# Parent  d75061ac28ab6811b6749d8b8ccc93a5942c5df6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 862f05b5053f55def8007194a702019418697cb5

diff -r d75061ac28ab -r 5325e44297b9 bamtools_split_paired.xml
--- a/bamtools_split_paired.xml	Wed Jan 11 13:37:37 2023 +0000
+++ b/bamtools_split_paired.xml	Fri Jan 13 12:18:14 2023 +0000
@@ -1,5 +1,5 @@
-<tool id="bamtools_split_paired" name="Split BAM by Paired/Single End" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
-    <description></description>
+<tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+    <description>reads datasets</description>
     <macros>
           <import>macros.xml</import>
     </macros>
@@ -17,8 +17,8 @@
         <param name="input_bam" type="data" format="bam" label="BAM dataset to split by single_end/paired_end"/>
     </inputs>
     <outputs>
-        <data format="bam" name="single" label="${input_bam.name} mapped" from_work_dir="split_bam.SINGLE_END.bam" />
-        <data format="bam" name="paired" label="${input_bam.name} unmapped" from_work_dir="split_bam.PAIRED_END.bam" />
+        <data format="bam" name="single" label="${input_bam.name} SE reads" from_work_dir="split_bam.SINGLE_END.bam" />
+        <data format="bam" name="paired" label="${input_bam.name} PE reads" from_work_dir="split_bam.PAIRED_END.bam" />
     </outputs>
     <tests>
         <test>
@@ -34,13 +34,9 @@
 
 -----
 
-.. class:: warningmark
-
-
 **How it works**
 
-
-Splits the input BAM file into 2 output files named (SINGLE_END) and (PAIRED_END) containing single_end and paired_end reads, respectively.
+Splits the input BAM file into 2 output files named containing single_end and paired_end reads, respectively.
 
 -----
 
diff -r d75061ac28ab -r 5325e44297b9 macros.xml
--- a/macros.xml	Wed Jan 11 13:37:37 2023 +0000
+++ b/macros.xml	Fri Jan 13 12:18:14 2023 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">2.5.2</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>
diff -r d75061ac28ab -r 5325e44297b9 test-data/bamtools-split-test1.bam
Binary file test-data/bamtools-split-test1.bam has changed