# HG changeset patch # User iuc # Date 1673612277 0 # Node ID e30af4e78cd3ab53dd4ec6bdc64481431e29b7e1 # Parent 45f0ce0a9f6317013cdad34df9639e951e787c11 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 862f05b5053f55def8007194a702019418697cb5 diff -r 45f0ce0a9f63 -r e30af4e78cd3 bamtools_split_tag.xml --- a/bamtools_split_tag.xml Wed Jan 11 13:37:55 2023 +0000 +++ b/bamtools_split_tag.xml Fri Jan 13 12:17:57 2023 +0000 @@ -1,5 +1,5 @@ - - into dataset list collection + + into a dataset list collection macros.xml @@ -37,15 +37,7 @@ **What is does** -BAMTools split is a utility for splitting BAM files. It is based on BAMtools suite of tools by Derek Barnett (https://github.com/pezmaster31/bamtools). - ------ - -.. class:: warningmark - -**DANGER: Multiple Outputs** - -As described below, splitting a BAM dataset(s) on tag value can produce very large numbers of outputs. Read below and know what you are doing. +BAMTools split is a utility for splitting BAM files. It is based on the BAMtools suite of tools by Derek Barnett (https://github.com/pezmaster31/bamtools). ----- @@ -53,8 +45,9 @@ Split alignments by tag name into a dataset list collection. -This can generate a huge number of output datasets depending on the number of distinct values of the TAG. +.. class:: warningmark +This can generate a collection with a huge number of elements depending on the number of distinct values of the TAG. ----- diff -r 45f0ce0a9f63 -r e30af4e78cd3 macros.xml --- a/macros.xml Wed Jan 11 13:37:55 2023 +0000 +++ b/macros.xml Fri Jan 13 12:17:57 2023 +0000 @@ -1,7 +1,7 @@ 2.5.2 - 0 + 1 bamtools diff -r 45f0ce0a9f63 -r e30af4e78cd3 test-data/bamtools-split-test1.bam Binary file test-data/bamtools-split-test1.bam has changed