Mercurial > repos > iuc > bandage
annotate macros.xml @ 6:b9e31c5c01c7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit fd23651fa43e8eefb7f55032c9ea645083042455"
author | iuc |
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date | Sat, 27 Nov 2021 10:09:14 +0000 |
parents | d8b1027d6ce0 |
children | ddddce450736 |
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067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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1 <macros> |
2
58124285e462
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 87337151f2f9ae1946db8b3a6da1c4f512ae135d
iuc
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2 <token name="@TOOL_VERSION@">0.8.1</token> |
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067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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3 <xml name="requirements"> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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4 <requirements> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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5 <requirement type="package" version="@TOOL_VERSION@">bandage</requirement> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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6 </requirements> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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7 </xml> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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8 <xml name="version_command"> |
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b2860df42e16
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit ef940ee99e8bf07cfe86b273a3eda72f09003fb3"
iuc
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9 <version_command>@HEADLESS@ Bandage --version</version_command> |
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067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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10 </xml> |
5
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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11 <xml name="bio_tools"> |
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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12 <xrefs> |
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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13 <xref type="bio.tools">bandage</xref> |
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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14 </xrefs> |
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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15 </xml> |
d8b1027d6ce0
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 7823462e83ff5efbcfd3161f7d471fd07da51611"
iuc
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16 <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]></token> |
0
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
diff
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17 <token name="@BANDAGE_OVERVIEW@"> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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18 |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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19 **Bandage Overview** |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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20 |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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21 Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others. |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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22 De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone. |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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23 |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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24 Bandage works with Graphical Fragment Assembly (GFA) files. For more information about this file format, see here_ |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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25 |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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26 .. _here: https://gfa-spec.github.io/GFA-spec/GFA2.html |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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27 </token> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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28 <xml name="citations"> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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29 <citations> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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30 <citation type="doi">10.1093/bioinformatics/btv383</citation> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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31 </citations> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
parents:
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32 </xml> |
067592b6b312
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
iuc
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33 </macros> |