Mercurial > repos > iuc > bandage

diff test-data/out_standard.txt @ 0:067592b6b312 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
author iuc
date Tue, 18 Sep 2018 05:41:44 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_standard.txt	Tue Sep 18 05:41:44 2018 -0400
@@ -0,0 +1,19 @@
+Node count:                       455
+Edge count:                       1061
+Smallest edge overlap (bp):       3348
+Largest edge overlap (bp):        4532
+Total length (bp):                2238438
+Total length no overlaps (bp):    268863
+Dead ends:                        12
+Percentage dead ends:             1.31868%
+Connected components:             7
+Largest component (bp):           1960789
+Total length orphaned nodes (bp): 1960789
+N50 (bp):                         4421
+Shortest node (bp):               736
+Lower quartile node (bp):         4290
+Median node (bp):                 4404
+Upper quartile node (bp):         4460
+Longest node (bp):                147170
+Median depth:                     1
+Estimated sequence length (bp):   297647