comparison test-data/basil.vcf @ 0:e6ef29001647 draft

planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
author iuc
date Thu, 30 May 2019 21:14:58 -0400
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-1:000000000000 0:e6ef29001647
1 ##fileformat=VCFv4.1
2 ##source=BASIL
3 ##reference=ref.fa
4 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
6 ##INFO=<ID=OEA_ONLY,Number=0,Type=Flag,Description="Breakpoint support by OEA signature only">
7 ##ALT=<ID=INS,Description="Insertion of novel sequence">
8 ##FORMAT=<ID=GSCORE,Number=1,Type=String,Description="Sum of Geometric score means (see BASIL documentation)">
9 ##FORMAT=<ID=CLEFT,Number=1,Type=String,Description="Clipped alignments supporting call from left side.">
10 ##FORMAT=<ID=CRIGHT,Number=1,Type=String,Description="Clipped alignments supporting call from right side.">
11 ##FORMAT=<ID=OEALEFT,Number=1,Type=String,Description="One-end anchored alignments supporting call from left side.">
12 ##FORMAT=<ID=OEARIGHT,Number=1,Type=String,Description="One-end anchored alignments supporting call from right side.">
13 ##contig=<ID=1,length=10000>
14 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT individual
15 1 5001 site_0 T <INS> . PASS IMPRECISE;SVTYPE=INS GSCORE:CLEFT:CRIGHT:OEALEFT:OEARIGHT 46.4256:10:12:35:32