Mercurial > repos > iuc > basil
diff test-data/basil.vcf @ 0:e6ef29001647 draft
planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
| author | iuc |
|---|---|
| date | Thu, 30 May 2019 21:14:58 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/basil.vcf Thu May 30 21:14:58 2019 -0400 @@ -0,0 +1,15 @@ +##fileformat=VCFv4.1 +##source=BASIL +##reference=ref.fa +##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation"> +##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> +##INFO=<ID=OEA_ONLY,Number=0,Type=Flag,Description="Breakpoint support by OEA signature only"> +##ALT=<ID=INS,Description="Insertion of novel sequence"> +##FORMAT=<ID=GSCORE,Number=1,Type=String,Description="Sum of Geometric score means (see BASIL documentation)"> +##FORMAT=<ID=CLEFT,Number=1,Type=String,Description="Clipped alignments supporting call from left side."> +##FORMAT=<ID=CRIGHT,Number=1,Type=String,Description="Clipped alignments supporting call from right side."> +##FORMAT=<ID=OEALEFT,Number=1,Type=String,Description="One-end anchored alignments supporting call from left side."> +##FORMAT=<ID=OEARIGHT,Number=1,Type=String,Description="One-end anchored alignments supporting call from right side."> +##contig=<ID=1,length=10000> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT individual +1 5001 site_0 T <INS> . PASS IMPRECISE;SVTYPE=INS GSCORE:CLEFT:CRIGHT:OEALEFT:OEARIGHT 46.4256:10:12:35:32