diff test-data/basil.vcf @ 0:e6ef29001647 draft

planemo upload commit b89c8017aeef91f940543a1cc7dadb4a85290865
author iuc
date Thu, 30 May 2019 21:14:58 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/basil.vcf	Thu May 30 21:14:58 2019 -0400
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+##fileformat=VCFv4.1
+##source=BASIL
+##reference=ref.fa
+##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
+##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
+##INFO=<ID=OEA_ONLY,Number=0,Type=Flag,Description="Breakpoint support by OEA signature only">
+##ALT=<ID=INS,Description="Insertion of novel sequence">
+##FORMAT=<ID=GSCORE,Number=1,Type=String,Description="Sum of Geometric score means (see BASIL documentation)">
+##FORMAT=<ID=CLEFT,Number=1,Type=String,Description="Clipped alignments supporting call from left side.">
+##FORMAT=<ID=CRIGHT,Number=1,Type=String,Description="Clipped alignments supporting call from right side.">
+##FORMAT=<ID=OEALEFT,Number=1,Type=String,Description="One-end anchored alignments supporting call from left side.">
+##FORMAT=<ID=OEARIGHT,Number=1,Type=String,Description="One-end anchored alignments supporting call from right side.">
+##contig=<ID=1,length=10000>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	individual
+1	5001	site_0	T	<INS>	.	PASS	IMPRECISE;SVTYPE=INS	GSCORE:CLEFT:CRIGHT:OEALEFT:OEARIGHT	46.4256:10:12:35:32