Mercurial > repos > iuc > bbtools_bbduk

comparison test-data/cv_output.txt @ 9:7beb76ffbc0f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
author iuc
date Tue, 27 Aug 2024 10:15:37 +0000
parents 204a131e47db
children
comparison
equal deleted inserted replaced
8:d1f62024a08b 9:7beb76ffbc0f
1 #fileformat 1 #fileformat Var_1.3
2 #BBMapVersion 2 #BBMapVersion 39.08
3 #ploidy 2 3 #ploidy 2
4 #rarity 1.00000 4 #rarity 1.00000
5 #minAlleleFraction 0.1000 5 #minAlleleFraction 0.1000
6 #reads 2207 6 #reads 2207
7 #pairedReads 0 7 #pairedReads 0
8 #properlyPairedReads 0 8 #properlyPairedReads 0
9 #readLengthAvg 9 #readLengthAvg 145.46
10 #properPairRate 10 #properPairRate 0.0000
11 #totalQualityAvg 11 #totalQualityAvg 36.5800
12 #mapqAvg 12 #mapqAvg 43.35
13 #reference 13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
14 #scaf start stop type call r1p r1m r2p r2m paired lengthSum mapq mapqMax baseq baseqMax edist edistMax id idMax cov minusCov nearbyVarCount flagged contigEndDist phredScore readCount alleleFraction revisedAF strandRatio baseqAvg mapqAvg edistAvg identityAvg edistScore identityScore qualityScore pairedScore biasScore coverageScore homopolymerScore score 14 #scaf start stop type call r1p r1m r2p r2m paired lengthSum mapq mapqMax baseq baseqMax edist edistMax id idMax cov minusCov nearbyVarCount flagged contigEndDist phredScore readCount alleleFraction revisedAF strandRatio baseqAvg mapqAvg edistAvg identityAvg edistScore identityScore qualityScore pairedScore biasScore coverageScore homopolymerScore score
15 0 976326 976327 SUB T 15 0 976326 976327 SUB T 2 0 0 0 0 292 77 40 48 24 111 65 1930 972 0 -1 0 0 0 22.21 2 1 1 0.5000 24 38.50 55.50 965 0.9972 0.9932 0.7489 0.9800 0.9737 0.7143 1 0.8725
16 0 1501931 1501932 SUB C 16 0 1501931 1501932 SUB C 0 2 0 0 0 292 88 44 64 39 74 38 1986 993 0 -1 0 0 0 27.20 2 1 1 0.5000 32 44 37 993 0.9851 0.9994 0.9831 0.9800 0.9737 0.7143 1 0.9202
17 0 3380578 3380579 SUB G 17 0 3380578 3380579 SUB G 0 2 0 0 0 289 87 44 75 38 105 63 1986 993 0 -1 0 0 0 27.85 2 1 1 0.5000 37.50 43.50 52.50 993 0.9968 0.9994 0.9972 0.9800 0.9737 0.7143 1 0.9250
18 0 3646292 3646293 SUB A 18 0 3646292 3646293 SUB A 1 1 0 0 0 291 86 44 76 38 44 31 1986 993 0 -1 0 0 0 23.34 2 1 1 1 38 43 22 993 0.7996 0.9994 0.9975 0.9800 0.9747 0.7143 1 0.8853