Mercurial > repos > iuc > bbtools_bbmap

annotate test-data/cv_output.txt @ 4:6d44c9f1a42b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 1800b13dcea155e96558f6b80989cf719071e300"
author iuc
date Thu, 03 Feb 2022 21:13:25 +0000
parents 17ad142b56e6
children 456d8ebb6a28
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
1 #fileformat
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
2 #BBMapVersion
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
3 #ploidy 2
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
4 #rarity 1.00000
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
5 #minAlleleFraction 0.1000
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
6 #reads 2207
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
7 #pairedReads 0
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
8 #properlyPairedReads 0
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
9 #readLengthAvg
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
10 #properPairRate
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
11 #totalQualityAvg
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
12 #mapqAvg
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
13 #reference
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
14 #scaf start stop type call r1p r1m r2p r2m paired lengthSum mapq mapqMax baseq baseqMax edist edistMax id idMax cov minusCov nearbyVarCount flagged contigEndDist phredScore readCount alleleFraction revisedAF strandRatio baseqAvg mapqAvg edistAvg identityAvg edistScore identityScore qualityScore pairedScore biasScore coverageScore homopolymerScore score
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
15 0 976326 976327 SUB T
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
16 0 1501931 1501932 SUB C
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
17 0 3380578 3380579 SUB G
17ad142b56e6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 56300a95740ee11e84a7d0bda07a71fbaf4952e4"
iuc
parents:
diff changeset
18 0 3646292 3646293 SUB A