Mercurial > repos > iuc > bbtools_bbmap

diff test-data/cv_output.gff @ 13:456d8ebb6a28 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
author iuc
date Tue, 27 Aug 2024 10:15:02 +0000
parents 17ad142b56e6
children
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--- a/test-data/cv_output.gff	Sat May 18 19:14:17 2024 +0000
+++ b/test-data/cv_output.gff	Tue Aug 27 10:15:02 2024 +0000
@@ -1,18 +1,18 @@
-##gff-version
-#BBMapVersion
+##gff-version 3
+#BBMapVersion	39.08
 #ploidy	2
 #rarity	1.00000
 #minAlleleFraction	0.1000
 #reads	2207
 #pairedReads	0
 #properlyPairedReads	0
-#readLengthAvg
+#readLengthAvg	145.46
 #properPairRate	0.0000
-#totalQualityAvg
-#mapqAvg
-#reference
+#totalQualityAvg	36.5800
+#mapqAvg	43.35
+#reference	/home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
 #seqid	source	type	start	end	score	strand	phase	attributes
-NC_002945.4	.	sequence_variant_obs	976327	976327
-NC_002945.4	.	sequence_variant_obs	1501932	1501932
-NC_002945.4	.	sequence_variant_obs	3380579	3380579
-NC_002945.4	.	sequence_variant_obs	3646293	3646293
+NC_002945.4	.	sequence_variant_obs	976327	976327	0.87	+	.	ID=SUB T
+NC_002945.4	.	sequence_variant_obs	1501932	1501932	0.92	+	.	ID=SUB C
+NC_002945.4	.	sequence_variant_obs	3380579	3380579	0.92	+	.	ID=SUB G
+NC_002945.4	.	sequence_variant_obs	3646293	3646293	0.89	+	.	ID=SUB A