diff macros.xml @ 6:cab19c0452c4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb

--- a/macros.xml	Sat May 18 19:12:59 2024 +0000
+++ b/macros.xml	Tue Aug 27 10:15:19 2024 +0000
@@ -1,15 +1,19 @@
 <macros>
-    <token name="@TOOL_VERSION@">39.06</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">39.08</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="edam_ontology">
         <edam_topics>
-            <edam_topic>topic_0622</edam_topic> <!-- Genomics -->
-            <edam_topic>topic_0091</edam_topic> <!-- Bioinformatics -->
+            <edam_topic>topic_0622</edam_topic>
+            <!-- Genomics -->
+            <edam_topic>topic_0091</edam_topic>
+            <!-- Bioinformatics -->
         </edam_topics>
         <edam_operations>
-            <edam_operation>operation_0496</edam_operation> <!-- Global alignment -->
-            <edam_operation>operation_0491</edam_operation> <!-- Pairwise sequence alignment -->
+            <edam_operation>operation_0496</edam_operation>
+            <!-- Global alignment -->
+            <edam_operation>operation_0491</edam_operation>
+            <!-- Pairwise sequence alignment -->
         </edam_operations>
     </xml>
     <xml name="bio.tools">
@@ -20,7 +24,8 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bbmap</requirement>
-            <requirement type="package" version="1.19.2">samtools</requirement> <!-- automatic solving installs 1.6 in some cases, instead -->
+            <requirement type="package" version="1.20">samtools</requirement>
+            <!-- automatic solving installs 1.6 in some cases, instead -->
         </requirements>
     </xml>
     <macro name="dbKeyActionsBBMap">
@@ -62,7 +67,7 @@
                 <param name="read2" type="data" format="fastqsanger.gz,fastqsanger" label="Reverse reads fastq file"/>
             </when>
             <when value="paired">
-                <param name="reads_collection" type="data_collection" format="fastqsanger,fastqsanger.gz" collection_type="paired" label="Collection of fastqsanger paired read files"/>
+                <param name="reads_collection" type="data_collection" format="fastqsanger,fastqsanger.gz" label="Collection of fastqsanger paired read files" collection_type="paired"/>
             </when>
         </conditional>
     </macro>
@@ -87,18 +92,18 @@
     </macro>
     <macro name="ktrim_cond">
         <conditional name="ktrim_cond">
-            <param name="ktrim_select"  type="select" label="Trim reads to remove bases matching reference kmers?">
+            <param name="ktrim_select" type="select" label="Trim reads to remove bases matching reference kmers?">
                 <option value="no" selected="true">No</option>
                 <option value="yes">Yes</option>
             </param>
             <when value="no"/>
             <when value="yes">
-                <param argument="ktrim"  type="select" label="Select trimming position">
+                <param argument="ktrim" type="select" label="Select trimming position">
                     <option value="r">Trim to the right</option>
                     <option value="l">Trim to the left</option>
                 </param>
                 <param argument="minlength" type="integer" value="10" label="Minimum read length" help="Trimmed reads shorter than this will be discarded, pairs will be discarded if both are shorter."/>
-             </when>
+            </when>
         </conditional>
     </macro>
     <xml name="citations">
@@ -109,4 +114,3 @@
         </citations>
     </xml>
 </macros>
-