Mercurial > repos > iuc > bbtools_bbnorm

annotate test-data/cv_output.gff @ 7:e607b61a68ad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 4c1b74f1d14c5cac8ed806de0bb207d00e7a0e51
author iuc
date Tue, 19 Nov 2024 20:08:27 +0000
parents 770bceda7785
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
1 ##gff-version 3
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
2 #BBMapVersion 39.08
0
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
3 #ploidy 2
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
4 #rarity 1.00000
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
5 #minAlleleFraction 0.1000
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
6 #reads 2207
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
7 #pairedReads 0
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
8 #properlyPairedReads 0
5
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
9 #readLengthAvg 145.46
0
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
10 #properPairRate 0.0000
5
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
11 #totalQualityAvg 36.5800
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
12 #mapqAvg 43.35
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
0
1ef267476a17 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 35db9ac8668f3e376886ea09de63c87dce93e1ce
iuc
parents:
diff changeset
14 #seqid source type start end score strand phase attributes
5
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
15 NC_002945.4 . sequence_variant_obs 976327 976327 0.87 + . ID=SUB T
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
16 NC_002945.4 . sequence_variant_obs 1501932 1501932 0.92 + . ID=SUB C
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
17 NC_002945.4 . sequence_variant_obs 3380579 3380579 0.92 + . ID=SUB G
770bceda7785 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
18 NC_002945.4 . sequence_variant_obs 3646293 3646293 0.89 + . ID=SUB A