Mercurial > repos > iuc > bbtools_callvariants
view test-data/cv_output.txt @ 11:3854db061e6e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 46992fbb9d79da3d3c45b0c10f2936cf2af2dbcd
author | iuc |
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date | Tue, 19 Nov 2024 14:47:48 +0000 |
parents | 7e041c120b96 |
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#fileformat Var_1.3 #BBMapVersion 39.08 #ploidy 2 #rarity 1.00000 #minAlleleFraction 0.1000 #reads 2207 #pairedReads 0 #properlyPairedReads 0 #readLengthAvg 145.46 #properPairRate 0.0000 #totalQualityAvg 36.5800 #mapqAvg 43.35 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta #scaf start stop type call r1p r1m r2p r2m paired lengthSum mapq mapqMax baseq baseqMax edist edistMax id idMax cov minusCov nearbyVarCount flagged contigEndDist phredScore readCount alleleFraction revisedAF strandRatio baseqAvg mapqAvg edistAvg identityAvg edistScore identityScore qualityScore pairedScore biasScore coverageScore homopolymerScore score 0 976326 976327 SUB T 2 0 0 0 0 292 77 40 48 24 111 65 1930 972 0 -1 0 0 0 22.21 2 1 1 0.5000 24 38.50 55.50 965 0.9972 0.9932 0.7489 0.9800 0.9737 0.7143 1 0.8725 0 1501931 1501932 SUB C 0 2 0 0 0 292 88 44 64 39 74 38 1986 993 0 -1 0 0 0 27.20 2 1 1 0.5000 32 44 37 993 0.9851 0.9994 0.9831 0.9800 0.9737 0.7143 1 0.9202 0 3380578 3380579 SUB G 0 2 0 0 0 289 87 44 75 38 105 63 1986 993 0 -1 0 0 0 27.85 2 1 1 0.5000 37.50 43.50 52.50 993 0.9968 0.9994 0.9972 0.9800 0.9737 0.7143 1 0.9250 0 3646292 3646293 SUB A 1 1 0 0 0 291 86 44 76 38 44 31 1986 993 0 -1 0 0 0 23.34 2 1 1 1 38 43 22 993 0.7996 0.9994 0.9975 0.9800 0.9747 0.7143 1 0.8853