# HG changeset patch
# User iuc
# Date 1408031192 14400
# Node ID bdd0cb7fbedfcd57a90048a0e8a28789798b96c5
Imported from capsule None
diff -r 000000000000 -r bdd0cb7fbedf bcftools_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bcftools_macros.xml Thu Aug 14 11:46:32 2014 -0400
@@ -0,0 +1,27 @@
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+ samtools
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+ @EXECUTABLE@ 2>&1 | head -n 3 | tail -n 1
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+ 10.1093/bioinformatics/btp352
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diff -r 000000000000 -r bdd0cb7fbedf bcftools_view.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bcftools_view.xml Thu Aug 14 11:46:32 2014 -0400
@@ -0,0 +1,94 @@
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+ Convert, filter, subset VCF/BCF files
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+ bcftools
+ bcftools_macros.xml
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+
+ @EXECUTABLE@ view
+ $A
+ $varsitesonly
+ $snpcalling
+ ##$F
+ $G
+ $N
+ $e
+ $g
+
+ #if str( $output_format ) == "bcf":
+ -b
+ #end if
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+ -D $seq_dict
+
+ -i $ratio
+ -t $rate
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+ $input
+ > $output
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+`_
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+------
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+**Outputs**
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+VCF or BCF files
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+]]>
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+
+
diff -r 000000000000 -r bdd0cb7fbedf tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Thu Aug 14 11:46:32 2014 -0400
@@ -0,0 +1,6 @@
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