# HG changeset patch # User iuc # Date 1408031192 14400 # Node ID bdd0cb7fbedfcd57a90048a0e8a28789798b96c5 Imported from capsule None diff -r 000000000000 -r bdd0cb7fbedf bcftools_macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bcftools_macros.xml Thu Aug 14 11:46:32 2014 -0400 @@ -0,0 +1,27 @@ + + + + samtools + + + + + @EXECUTABLE@ 2>&1 | head -n 3 | tail -n 1 + + + + + + + + + + + + + + 10.1093/bioinformatics/btp352 + + + + diff -r 000000000000 -r bdd0cb7fbedf bcftools_view.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bcftools_view.xml Thu Aug 14 11:46:32 2014 -0400 @@ -0,0 +1,94 @@ + + Convert, filter, subset VCF/BCF files + + + + + bcftools + bcftools_macros.xml + + + @EXECUTABLE@ view + $A + $varsitesonly + $snpcalling + ##$F + $G + $N + $e + $g + + #if str( $output_format ) == "bcf": + -b + #end if + + -D $seq_dict + + -i $ratio + -t $rate + + $input + > $output + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +`_ + +------ + +**Outputs** + +VCF or BCF files + +]]> + + + diff -r 000000000000 -r bdd0cb7fbedf tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Aug 14 11:46:32 2014 -0400 @@ -0,0 +1,6 @@ + + + + + +