Mercurial > repos > iuc > bcftools_annotate
annotate test-data/reheader.hdr @ 14:4f7a47e3857c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
author | iuc |
---|---|
date | Sat, 15 Jan 2022 13:40:18 +0000 |
parents | e58e34d48868 |
children |
rev | line source |
---|---|
0
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
1 ##fileformat=VCFv4.2 |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
2 ##INFO=<ID=DP2,Number=2,Type=Integer,Description="Depth"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
3 ##FILTER=<ID=Test,Description="Test filter"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
4 ##FORMAT=<ID=DP2,Number=2,Type=Integer,Description="Depth"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
5 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
7 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
8 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
9 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
10 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled likelihood"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
11 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Depth"> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
12 ##contig=<ID=12,length=123456789> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
13 ##contig=<ID=20,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
14 ##contig=<ID=5,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
15 ##contig=<ID=1,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
16 ##contig=<ID=2,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
17 ##contig=<ID=3,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
18 ##contig=<ID=4,length=2147483647> |
e58e34d48868
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
19 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT AAA0001 BBB0002 |