comparison bcftools_concat.xml @ 2:50ff4b18319c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6

1:c61d9e5366ec

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0">
    <description>Concatenate or combine VCF/BCF files</description>
    <macros>
        <token name="@EXECUTABLE@">concat</token>
        <import>macros.xml</import>
    </macros>

            </conditional>
            <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate" 
                   help="Ligate phased VCFs by matching phase at overlapping haplotypes" />
            <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" 
                   help="Do not output PS tag at each site, only at the start of a new phase set block." />
            <param name="min_PQ" type="integer" label="Min Pq" default="30" optional="True" 
                   help="Break phase set if phasing quality is lower than &lt;int&gt;" />
        </section>
        <expand macro="macro_select_output_type" />
    </inputs>
    <outputs>

2:50ff4b18319c

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
    <description>Concatenate or combine VCF/BCF files</description>
    <macros>
        <token name="@EXECUTABLE@">concat</token>
        <import>macros.xml</import>
    </macros>

            </conditional>
            <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate" 
                   help="Ligate phased VCFs by matching phase at overlapping haplotypes" />
            <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" 
                   help="Do not output PS tag at each site, only at the start of a new phase set block." />
            <param name="min_PQ" type="integer" label="Min Pq" value="30" optional="True" 
                   help="Break phase set if phasing quality is lower than &lt;int&gt;" />
        </section>
        <expand macro="macro_select_output_type" />
    </inputs>
    <outputs>