Mercurial > repos > iuc > bcftools_concat

diff bcftools_concat.xml @ 5:40174941cbda draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author: iuc
date: Thu, 13 Apr 2017 17:44:25 -0400
parents: 3b318cfab085
children: 2d95ed0b720a
--- a/bcftools_concat.xml	Sat Mar 11 17:57:53 2017 -0500
+++ b/bcftools_concat.xml	Thu Apr 13 17:44:25 2017 -0400
@@ -10,6 +10,9 @@
     <command detect_errors="aggressive"><![CDATA[
 @PREPARE_ENV@
 @PREPARE_INPUT_FILES@
+#set $section = $sec_restrict
+@PREPARE_REGIONS_FILE@
+
 bcftools @EXECUTABLE@
 
 ## Default section
@@ -35,7 +38,7 @@
 
 ## Primary Input/Outputs
 @INPUT_FILES@ 
-> "$output_file"
+> '$output_file'
 ]]>
     </command>
     <inputs>