Mercurial > repos > iuc > bcftools_convert_from_vcf

comparison test-data/vcf2sex.vcf @ 0:16f221807ecd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:02:27 -0400
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-1:000000000000 0:16f221807ecd
1 ##fileformat=VCFv4.2
2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
3 ##contig=<ID=X,assembly=b37,length=249250621>
4 ##contig=<ID=Y,assembly=b37,length=249250621>
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT MALE FEMALE
6 X 1 . C A . PASS . GT 1 0/1
7 X 12000 . C A . PASS . GT 0 0/1
8 X 24000 . C A . PASS . GT 1 0/1
9 X 36000 . C A . PASS . GT 0 0/1
10 X 48000 . C A . PASS . GT 1 0/1
11 X 60000 . C A . PASS . GT 0 0/1
12 X 100000 . C A . PASS . GT 0/1 0/1
13 X 2699521 . C A . PASS . GT 0 0/1
14 X 33145825 . C A . PASS . GT 1 0/1
15 X 63592129 . C A . PASS . GT 1 0/1
16 X 94038433 . C A . PASS . GT 0 0/1
17 X 124484737 . C A . PASS . GT 0 0/1
18 X 154931043 . C A . PASS . GT 0/1 0/1
19 Y 1 . C A . PASS . GT 0 .
20 Y 11874713 . C A . PASS . GT 0 .
21 Y 23749426 . C A . PASS . GT 0 .
22 Y 35624139 . C A . PASS . GT 0 .
23 Y 47498852 . C A . PASS . GT 0 .
24 Y 59373565 . C A . PASS . GT 0 .