Mercurial > repos > iuc > bcftools_convert_from_vcf

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:02:27 -0400
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##fileformat=VCFv4.2
##INFO=<ID=DP2,Number=2,Type=Integer,Description="Depth">
##FILTER=<ID=Test,Description="Test filter">
##FORMAT=<ID=DP2,Number=2,Type=Integer,Description="Depth">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled likelihood">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Depth">
##contig=<ID=12,length=123456789>
##contig=<ID=20,length=2147483647>
##contig=<ID=5,length=2147483647>
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=3,length=2147483647>
##contig=<ID=4,length=2147483647>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	AAA0001	BBB0002