Mercurial > repos > iuc > bcftools_convert_to_vcf
annotate test-data/concat.2.a.vcf @ 22:cfd81f17580b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 784611c9caf2680d41414ca2880b93a69d719701
author | iuc |
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date | Sun, 18 Aug 2024 10:11:39 +0000 (4 months ago) |
parents | b068ef999550 |
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rev | line source |
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0
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
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1 ##fileformat=VCFv4.0 |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
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2 ##INFO=<ID=XX,Number=1,Type=Integer,Description="Test"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
7 ##FILTER=<ID=Fail,Description="Fail"> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
8 ##contig=<ID=1,length=62435964> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
9 ##contig=<ID=2,length=62435964> |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
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11 2 140 . A G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
12 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10 |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
13 1 110 . C T,G 1792 Fail XX=11;DP=32 GT:GQ:DP 0/1:245:32 |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 |
b068ef999550
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
15 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 |