comparison macros.xml @ 20:7291189e98b4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit bfc4ff4956b94885638ae07a2560bac5f84fcca8

19:4935320a59a8

  --fasta-ref '${section.fasta_ref}'
#end if
  </token>

  <xml name="macro_AF_file">
    <param name="AF_file" argument="--AF-file" type="data" format="tabular" optional="true" label="Allele frequencies file" help="Tab-delimited file containing the columns CHR,POS,REF,ALT,AF" />
  </xml>
  <!-- This may need to bgzip and tabix the file -->
  <token name="@PREPARE_AF_FILE@">
<![CDATA[
#if 'AF_file' in $section and $section.AF_file:

  --AF-file '${section.AF_file}'
#end if
  </token>

  <xml name="macro_estimate_AF">
      <param name="estimate_AF" argument="--estimate-AF" type="data" format="data" optional="true" label="Estimate allele frequency" help="Calculate AC,AN counts on the fly, using either all samples (&quot;-&quot;) or samples listed in &lt;file&gt;" />
  </xml>
  <token name="@ESTIMATE_AF@">
#if 'estimate_AF' in $section and $section.estimate_AF:
  --estimate-AF "${section.estimate_AF}"
#end if

20:7291189e98b4

  --fasta-ref '${section.fasta_ref}'
#end if
  </token>

  <xml name="macro_AF_file">
    <param argument="--AF-file" type="data" format="tabular" optional="true" label="Allele frequencies file" help="Tab-delimited file containing the columns CHR,POS,REF,ALT,AF" />
  </xml>
  <!-- This may need to bgzip and tabix the file -->
  <token name="@PREPARE_AF_FILE@">
<![CDATA[
#if 'AF_file' in $section and $section.AF_file:

  --AF-file '${section.AF_file}'
#end if
  </token>

  <xml name="macro_estimate_AF">
      <param argument="--estimate-AF" type="data" format="data" optional="true" label="Estimate allele frequency" help="Calculate AC,AN counts on the fly, using either all samples (&quot;-&quot;) or samples listed in &lt;file&gt;" />
  </xml>
  <token name="@ESTIMATE_AF@">
#if 'estimate_AF' in $section and $section.estimate_AF:
  --estimate-AF "${section.estimate_AF}"
#end if