Mercurial > repos > iuc > bcftools_convert_to_vcf
comparison test-data/view.GL.vcf @ 0:b068ef999550 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author | iuc |
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date | Wed, 06 Jul 2016 07:02:49 -0400 (2016-07-06) |
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-1:000000000000 | 0:b068ef999550 |
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1 ##fileformat=VCFv4.1 | |
2 ##FILTER=<ID=PASS,Description="All filters passed"> | |
3 ##reference=file:///seq/references/1000Genomes-NCBI37.fasta | |
4 ##contig=<ID=11,length=135006516> | |
5 ##contig=<ID=20,length=63025520> | |
6 ##contig=<ID=X,length=155270560> | |
7 ##contig=<ID=Y,length=59373566> | |
8 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="List of Phred-scaled genotype likelihoods"> | |
9 ##FILTER=<ID=StrandBias,Description="Min P-value for strand bias (INFO/PV4) [0.0001]"> | |
10 ##FILTER=<ID=BaseQualBias,Description="Min P-value for baseQ bias (INFO/PV4) [1e-100]"> | |
11 ##FILTER=<ID=MapQualBias,Description="Min P-value for mapQ bias (INFO/PV4) [0]"> | |
12 ##FILTER=<ID=EndDistBias,Description="Min P-value for end distance bias (INFO/PV4) [0.0001]"> | |
13 ##FILTER=<ID=MinAB,Description="Minimum number of alternate bases (INFO/DP4) [2]"> | |
14 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 | |
15 11 2343543 . A . 999 PASS . GL 0,-25.5,-25.5 0,-25.5,-25.5 0,-25.5,-25.5 | |
16 11 5464562 . C T 999 PASS . GL 0,0,0 0,0,0 0,0,0 | |
17 20 76962 rs6111385 T C 999 PASS . GL -25.5,0,-25.5 -25.5,-25.5,0 -25.5,-25.5,0 | |
18 20 126310 . ACC A 999 StrandBias;EndDistBias . GL -25.5,0,-13.2 -25.5,0,-13.9 -25.5,-21.3,0 | |
19 20 138125 rs2298108 G T 999 PASS . GL -13.5,0,-16.3 -14,0,-25.5 -25.5,-19.9,0 | |
20 20 138148 rs2298109 C T 999 PASS . GL -19.5,0,-25.5 -19.2,0,-25.5 -25.5,-23.5,0 | |
21 20 271225 . T TTTA,TA 999 StrandBias . GL -15.1,-5.3,-20.3,0,-5.2,-15.9 -25.5,0,-21.3,-25.5,-25.5,-25.5 -25.5,-25.5,-25.5,-25.5,0,-24.1 | |
22 20 304568 . C T 999 PASS . GL -9.5,0,-25.5 -19.2,0,-25.5 -25.5,-9.5,0 | |
23 20 326891 . A AC 999 PASS . GL -25.5,0,-13.2 -25.5,0,-13.9 .,.,. | |
24 X 2928329 rs62584840 C T 999 PASS . GL 0,-5.6 0,-8.1 -7.3,0,-1.9 | |
25 X 2933066 rs61746890 G C 999 PASS . GL 0,-25.5 0,-25.5 -25.5,-25.5,-25.5 | |
26 X 2942109 rs5939407 T C 999 PASS . GL 0,-25.5 -25.5,0 -25.5,-15.7,0 | |
27 X 3048719 . T C 999 PASS . GL 0,-25.5 -25.5,0 -25.5,0,-15.7 | |
28 Y 8657215 . C A 999 PASS . GL 0,-25.5 -25.5,0 . | |
29 Y 10011673 rs78249411 G A 999 MinAB . GL -12.6,-10.1 -9.5,0 . |