Mercurial > repos > iuc > bcftools_convert_to_vcf

view test-data/cnv.vcf @ 10:7887b9d94c05 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
author iuc
date Thu, 17 Oct 2019 02:33:30 -0400
parents 843e008b15fd
children
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##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GC,Number=1,Type=Float,Description="GenCall score">
##FORMAT=<ID=IA,Number=1,Type=Float,Description="Intensity of the A Allele">
##FORMAT=<ID=IB,Number=1,Type=Float,Description="Intensity of the B Allele">
##FORMAT=<ID=BAF,Number=1,Type=Float,Description="B Allele Frequency">
##FORMAT=<ID=LRR,Number=1,Type=Float,Description="Log R Ratio">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	test
10	135656	rs10904561	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0415:0.5176:0.543:0.661:0.9477
10	135708	rs7917054	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.2441:0.501:0.742:0.659:0.9604
10	178434	rs7089889	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1440:0.4833:0.836:0.827:0.8884
10	188805	rs12146291	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.2144:0.4715:0.776:0.743:0.9610
10	203471	rs10903451	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.4201:0.0000:0.619:0.022:0.9337
10	252693	rs2379078	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.2673:0.0068:0.806:0.081:0.9018
10	273344	rs2448378	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.7407:0.0000:0.497:0.012:0.9411
10	279248	rs2496278	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.4228:0.6268:0.285:0.958:0.6772
10	291134	rs10508201	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1085:0.4723:0.317:0.444:0.9106
10	293358	exm2249181	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0097:0.0044:1.507:0.061:0.3992
10	313504	rs4880568	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.5836:0.9803:0.017:0.321:0.9547
10	317501	rs2018975	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.3392:0:1.069:0.039:0.7852
10	323283	rs3740304	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1836:0.5588:1.053:1.110:0.8640
10	326894	rs3125027	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0517:0.0005:1.300:0.026:0.8916
10	327162	exm805022	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1197:0:0.995:0.015:0.5328
10	329493	rs3815985	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0480:0.5187:0.824:0.794:0.9109
10	338553	rs3125031	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3387:0.4696:0.777:1.004:0.7901
10	354301	rs35198327	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.1338:0.4929:0.903:0.996:0.8546
10	375475	variant.11341	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0747:0.000199999999999978:1.132:0.012:0.4773
10	377161	rs7070654	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1388:0:0.582:0.020:0.9458
10	387060	rs7904155	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.0615:0.9945:0.080:1.883:0.8310
10	390962	exm805090	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0087:9.9999999999989e-05:1.226:0.063:0.6950
10	390983	exm805091	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.3606:0:0.398:0.035:0.4585
10	394615	exm805105	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0170:0:1.345:0.020:0.4108
10	402390	exm805131	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0341:0.0000:1.127:0.023:0.8735
10	403792	exm805136	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1428:0.0000:0.908:0.019:0.8483
10	410501	exm805166	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0189:0:1.162:0.050:0.4628
10	413010	rs9787422	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0871:0.5334:0.908:0.961:0.8338
10	423555	rs12245012	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1264:0.00149999999999995:1.658:0.040:0.8015
10	423671	rs10904067	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3622:0.5566:0.326:0.370:0.9306
10	431161	exm2271240	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0175:0.4838:0.935:1.004:0.8308
10	435971	exm2249233	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.2716:0.0000:1.217:0.042:0.3992
10	435990	exm805214	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1427:0:1.107:0.031:0.4295
10	453567	rs4881254	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.1831:0.5079:1.032:1.425:0.8149
10	462885	rs10904173	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0930:0.4819:0.568:0.489:0.9332
10	465046	exm805254	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1108:0:1.041:0.038:0.8704
10	468599	rs12415961	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1647:0.5021:1.192:0.825:0.8051
10	486935	exm805280	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1369:0.0186:0.643:0.060:0.4804
10	487973	rs4881313	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0644:0.5628:0.747:0.992:0.8463
10	521431	exm2271370	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.0436:0.9952:0.028:1.491:0.8545
10	521723	rs4881336	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.2056:1:0.055:1.228:0.8344
10	547567	rs816599	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0079:1.0000:0.023:1.101:0.9490
10	554186	rs12251997	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1537:0.00309999999999999:1.565:0.032:0.8228
10	556129	rs10466270	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0014:0.5142:0.709:0.732:0.9257
10	566379	rs11252926	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0211:0.5024:0.559:0.493:0.9438
10	588406	rs10904450	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0834:0.0006:1.837:0.066:0.8107
10	592283	rs816646	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3907:0.5006:0.268:0.158:0.8540
10	601089	rs816650	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0897:0:1.053:0.009:0.9557
10	615782	rs17221309	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.2800:0.00319999999999998:1.764:0.035:0.7820
10	635857	rs7069611	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0450:0.0013:0.593:0.017:0.9595
10	669358	rs7898821	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1257:0:1.694:0.067:0.7270
10	673037	rs816563	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.1368:0.9065:0.167:0.495:0.4895
10	680428	rs2124585	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0590:0.5212:0.660:1.123:0.7133
10	712617	rs17136372	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0174:0.9992:0.028:0.975:0.9556
10	738630	rs1750792	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0269:0:1.575:0.025:0.8126
10	749238	rs553326	G	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1758:0.00229999999999997:0.955:0.019:0.9300
10	754033	rs2265090	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1347:0:1.181:0.025:0.9176
10	757222	rs10904546	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.3035:0.0000:1.975:0.056:0.8047
10	766105	rs7906313	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1672:0.0116:0.960:0.062:0.9381
10	776027	rs11253377	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.1474:0.9964:0.046:1.017:0.9087
10	787896	rs1769242	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.2049:0.0000:0.965:0.029:0.9107
10	800213	rs2254501	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.2422:0.9918:0.027:0.612:0.9374
10	802445	rs1769215	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0188:0.00370000000000004:0.859:0.024:0.9303
10	803721	rs2790381	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0421:0.9798:0.029:0.485:0.9700
10	811876	rs12414585	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0717:0.516:0.374:0.276:0.9351
10	813426	rs11253424	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.5256:0:0.333:0.000:0.8993
10	815149	rs7084027	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.3183:0.9944:0.037:1.547:0.8419
10	820868	rs10752019	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0749:0.0118:1.349:0.070:0.8882
10	833528	exm2271241	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.0329:0.4896:0.569:0.681:0.9348
10	834736	rs4881530	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0453:0.00249999999999995:1.578:0.040:0.8076
10	836115	rs11253444	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.1380:0.5199:0.596:0.670:0.9248
10	838179	rs1536337	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0534:0.0000:1.318:0.095:0.7967
10	858022	rs9124	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.5565:0:0.715:0.012:0.9397
10	858924	exm805329	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0866:0:0.873:0.021:0.9056
10	859047	exm805338	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1868:0:0.917:0.007:0.5296
10	860687	exm805350	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1509:0:1.172:0.059:0.3777
10	860726	exm805354	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0224:0.0000:2.255:0.138:0.3747
10	860970	exm805360	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1069:0.0000:1.859:0.070:0.7352
10	871110	exm805378	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0701:0.0000:1.373:0.002:0.4607
10	871746	exm805386	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1743:0.00239999999999996:0.597:0.017:0.5312
10	875350	exm805392	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1814:0:0.924:0.018:0.5191
10	888899	exm805400	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0585:0.00470000000000004:1.182:0.028:0.5116
10	888916	exm805401	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1408:0.0000:1.480:0.041:0.4128
10	894838	rs12249828	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.2119:0.4839:1.145:1.256:0.8432
10	903950	rs11253471	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.0047:0.4747:0.562:0.549:0.9470
10	909757	exm805413	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0614:0:1.538:0.027:0.4097
10	909766	exm805415	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0578:0:1.502:0.023:0.4128
10	910074	exm805420	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0503:0.0071:1.001:0.057:0.5002
10	910081	exm805421	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1352:0.002:1.125:0.033:0.4254
10	927331	rs11253489	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0370:0.5325:0.976:1.435:0.7729
10	931618	exm805430	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0474:0:1.222:0.009:0.4871
10	931631	exm805431	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0819:0.00390000000000001:0.827:0.023:0.5296
11	135656	rs10904561	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0415:0.5176:0.543:0.661:0.9477
11	135708	rs7917054	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.2441:0.501:0.742:0.659:0.9604
11	178434	rs7089889	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1440:0.4833:0.836:0.827:0.8884
11	188805	rs12146291	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.2144:0.4715:0.776:0.743:0.9610
11	203471	rs10903451	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.4201:0.0000:0.619:0.022:0.9337
11	252693	rs2379078	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.2673:0.0068:0.806:0.081:0.9018
11	273344	rs2448378	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.7407:0.0000:0.497:0.012:0.9411
11	279248	rs2496278	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.4228:0.6268:0.285:0.958:0.6772
11	291134	rs10508201	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1085:0.4723:0.317:0.444:0.9106
11	293358	exm2249181	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0097:0.0044:1.507:0.061:0.3992
11	313504	rs4880568	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.5836:0.9803:0.017:0.321:0.9547
11	317501	rs2018975	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.3392:0:1.069:0.039:0.7852
11	323283	rs3740304	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1836:0.5588:1.053:1.110:0.8640
11	326894	rs3125027	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0517:0.0005:1.300:0.026:0.8916
11	327162	exm805022	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1197:0:0.995:0.015:0.5328
11	329493	rs3815985	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0480:0.5187:0.824:0.794:0.9109
11	338553	rs3125031	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3387:0.4696:0.777:1.004:0.7901
11	354301	rs35198327	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.1338:0.4929:0.903:0.996:0.8546
11	375475	variant.11341	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0747:0.000199999999999978:1.132:0.012:0.4773
11	377161	rs7070654	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1388:0:0.582:0.020:0.9458
11	387060	rs7904155	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.0615:0.9945:0.080:1.883:0.8310
11	390962	exm805090	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0087:9.9999999999989e-05:1.226:0.063:0.6950
11	390983	exm805091	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.3606:0:0.398:0.035:0.4585
11	394615	exm805105	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0170:0:1.345:0.020:0.4108
11	402390	exm805131	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0341:0.0000:1.127:0.023:0.8735
11	403792	exm805136	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1428:0.0000:0.908:0.019:0.8483
11	410501	exm805166	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0189:0:1.162:0.050:0.4628
11	413010	rs9787422	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0871:0.5334:0.908:0.961:0.8338
11	423555	rs12245012	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1264:0.00149999999999995:1.658:0.040:0.8015
11	423671	rs10904067	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3622:0.5566:0.326:0.370:0.9306
11	431161	exm2271240	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0175:0.4838:0.935:1.004:0.8308
11	435971	exm2249233	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.2716:0.0000:1.217:0.042:0.3992
11	435990	exm805214	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1427:0:1.107:0.031:0.4295
11	453567	rs4881254	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.1831:0.5079:1.032:1.425:0.8149
11	462885	rs10904173	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0930:0.4819:0.568:0.489:0.9332
11	465046	exm805254	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1108:0:1.041:0.038:0.8704
11	468599	rs12415961	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.1647:0.5021:1.192:0.825:0.8051
11	486935	exm805280	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1369:0.0186:0.643:0.060:0.4804
11	487973	rs4881313	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0644:0.5628:0.747:0.992:0.8463
11	521431	exm2271370	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.0436:0.9952:0.028:1.491:0.8545
11	521723	rs4881336	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.2056:1:0.055:1.228:0.8344
11	547567	rs816599	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0079:1.0000:0.023:1.101:0.9490
11	554186	rs12251997	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1537:0.00309999999999999:1.565:0.032:0.8228
11	556129	rs10466270	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:0.0014:0.5142:0.709:0.732:0.9257
11	566379	rs11252926	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0211:0.5024:0.559:0.493:0.9438
11	588406	rs10904450	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0834:0.0006:1.837:0.066:0.8107
11	592283	rs816646	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.3907:0.5006:0.268:0.158:0.8540
11	601089	rs816650	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0897:0:1.053:0.009:0.9557
11	615782	rs17221309	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.2800:0.00319999999999998:1.764:0.035:0.7820
11	635857	rs7069611	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0450:0.0013:0.593:0.017:0.9595
11	669358	rs7898821	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1257:0:1.694:0.067:0.7270
11	673037	rs816563	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.1368:0.9065:0.167:0.495:0.4895
11	680428	rs2124585	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:-0.0590:0.5212:0.660:1.123:0.7133
11	712617	rs17136372	A	C	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0174:0.9992:0.028:0.975:0.9556
11	738630	rs1750792	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0269:0:1.575:0.025:0.8126
11	749238	rs553326	G	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1758:0.00229999999999997:0.955:0.019:0.9300
11	754033	rs2265090	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1347:0:1.181:0.025:0.9176
11	757222	rs10904546	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.3035:0.0000:1.975:0.056:0.8047
11	766105	rs7906313	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1672:0.0116:0.960:0.062:0.9381
11	776027	rs11253377	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.1474:0.9964:0.046:1.017:0.9087
11	787896	rs1769242	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.2049:0.0000:0.965:0.029:0.9107
11	800213	rs2254501	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.2422:0.9918:0.027:0.612:0.9374
11	802445	rs1769215	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0188:0.00370000000000004:0.859:0.024:0.9303
11	803721	rs2790381	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:-0.0421:0.9798:0.029:0.485:0.9700
11	811876	rs12414585	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0717:0.516:0.374:0.276:0.9351
11	813426	rs11253424	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.5256:0:0.333:0.000:0.8993
11	815149	rs7084027	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	1/1:0.3183:0.9944:0.037:1.547:0.8419
11	820868	rs10752019	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0749:0.0118:1.349:0.070:0.8882
11	833528	exm2271241	T	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.0329:0.4896:0.569:0.681:0.9348
11	834736	rs4881530	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0453:0.00249999999999995:1.578:0.040:0.8076
11	836115	rs11253444	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.1380:0.5199:0.596:0.670:0.9248
11	838179	rs1536337	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0534:0.0000:1.318:0.095:0.7967
11	858022	rs9124	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.5565:0:0.715:0.012:0.9397
11	858924	exm805329	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0866:0:0.873:0.021:0.9056
11	859047	exm805338	C	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1868:0:0.917:0.007:0.5296
11	860687	exm805350	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1509:0:1.172:0.059:0.3777
11	860726	exm805354	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0224:0.0000:2.255:0.138:0.3747
11	860970	exm805360	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1069:0.0000:1.859:0.070:0.7352
11	871110	exm805378	G	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0701:0.0000:1.373:0.002:0.4607
11	871746	exm805386	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1743:0.00239999999999996:0.597:0.017:0.5312
11	875350	exm805392	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1814:0:0.924:0.018:0.5191
11	888899	exm805400	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0585:0.00470000000000004:1.182:0.028:0.5116
11	888916	exm805401	T	C	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.1408:0.0000:1.480:0.041:0.4128
11	894838	rs12249828	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.2119:0.4839:1.145:1.256:0.8432
11	903950	rs11253471	A	G	.	.	.	GT:LRR:BAF:IA:IB:GC	0/1:-0.0047:0.4747:0.562:0.549:0.9470
11	909757	exm805413	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0614:0:1.538:0.027:0.4097
11	909766	exm805415	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0578:0:1.502:0.023:0.4128
11	910074	exm805420	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0503:0.0071:1.001:0.057:0.5002
11	910081	exm805421	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.1352:0.002:1.125:0.033:0.4254
11	927331	rs11253489	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	1/0:0.0370:0.5325:0.976:1.435:0.7729
11	931618	exm805430	G	A	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:0.0474:0:1.222:0.009:0.4871
11	931631	exm805431	C	T	.	.	.	GT:LRR:BAF:IA:IB:GC	0/0:-0.0819:0.00390000000000001:0.827:0.023:0.5296