Mercurial > repos > iuc > bcftools_convert_to_vcf
view test-data/norm.setref.vcf @ 5:7b50ab23976c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
| author | iuc |
|---|---|
| date | Thu, 13 Apr 2017 17:41:29 -0400 |
| parents | b068ef999550 |
| children |
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##fileformat=VCFv4.2 ##FILTER=<ID=PASS,Description="All filters passed"> ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled likelihood"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Depth"> ##contig=<ID=1,length=2147483647> ##contig=<ID=2,length=2147483647> ##contig=<ID=3,length=2147483647> ##contig=<ID=4,length=2147483647> ##contig=<ID=5,length=2147483647> ##contig=<ID=20,length=2147483647> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO"> ##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO"> ##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO"> ##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO"> ##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO"> ##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO"> ##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO"> ##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO"> ##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO"> ##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FGF,Number=G,Type=Float,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FGI,Number=G,Type=Integer,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FGS,Number=G,Type=String,Description="Test Number=AGR in FORMAT"> ##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test String in FORMAT"> ##INFO=<ID=ISTR,Number=1,Type=String,Description="Test String in INFO"> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT XY00001 XY00002 1 105 . TAACCCTAAA TAAACCCTAAA,TAA 999 PASS INDEL;AN=4;AC=2,2;DP=19 GT 1/2 1/2 2 101 . . c 999 PASS INDEL;AN=4;AC=4 GT:DP 1/1:1 1/1:1 2 105 . n <DEL> 999 PASS END=112;AN=4;AC=3 GT:DP 0/1:1 1/1:1 2 115 . t c 999 PASS INDEL;AN=4;AC=4 GT:DP 1/1:1 1/1:1 20 3 . c g 999 PASS INDEL;AN=4;AC=1 GT 0/0 0/1 20 3 . gact gatg 999 PASS INDEL;AN=4;AC=2 GT 1/0 1/0 20 10 . . . 999 PASS INDEL;AN=4;AC=1 GT 1/0 0/0 20 275 . g c,a,t,aaa 999 PASS INDEL;AN=2;AC=0,2,0,0 GT 2 2