Mercurial > repos > iuc > bcftools_filter
annotate test-data/concat.2.b.vcf @ 13:abafcb875ba6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit d5a01866d60f9775392420988259f1e79c464163"
author | iuc |
---|---|
date | Thu, 14 Oct 2021 10:08:42 +0000 |
parents | 061729be105d |
children |
rev | line source |
---|---|
0
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
1 ##fileformat=VCFv4.0 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
6 ##FILTER=<ID=q10,Description="Quality below 10"> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
7 ##contig=<ID=1,length=62435964> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
8 ##contig=<ID=2,length=62435964> |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
10 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
11 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
12 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
13 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
15 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
16 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
17 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
18 2 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
19 2 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
20 2 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
21 2 130 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
22 2 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
23 2 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10 |
061729be105d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
diff
changeset
|
24 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10 |