Mercurial > repos > iuc > bcftools_filter

view test-data/vcf2sex.vcf @ 11:0117c6d2ab96 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 8f3fe2272c80fdb749db49be689681e4d1391bee"
author iuc
date Wed, 25 Dec 2019 12:34:35 -0500
parents 061729be105d
children
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##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=X,assembly=b37,length=249250621>
##contig=<ID=Y,assembly=b37,length=249250621>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	MALE	FEMALE
X	1	.	C	A	.	PASS	.	GT	1	0/1
X	12000	.	C	A	.	PASS	.	GT	0	0/1
X	24000	.	C	A	.	PASS	.	GT	1	0/1
X	36000	.	C	A	.	PASS	.	GT	0	0/1
X	48000	.	C	A	.	PASS	.	GT	1	0/1
X	60000	.	C	A	.	PASS	.	GT	0	0/1
X	100000	.	C	A	.	PASS	.	GT	0/1	0/1
X	2699521	.	C	A	.	PASS	.	GT	0	0/1
X	33145825	.	C	A	.	PASS	.	GT	1	0/1
X	63592129	.	C	A	.	PASS	.	GT	1	0/1
X	94038433	.	C	A	.	PASS	.	GT	0	0/1
X	124484737	.	C	A	.	PASS	.	GT	0	0/1
X	154931043	.	C	A	.	PASS	.	GT	0/1	0/1
Y	1	.	C	A	.	PASS	.	GT	0	.
Y	11874713	.	C	A	.	PASS	.	GT	0	.
Y	23749426	.	C	A	.	PASS	.	GT	0	.
Y	35624139	.	C	A	.	PASS	.	GT	0	.
Y	47498852	.	C	A	.	PASS	.	GT	0	.
Y	59373565	.	C	A	.	PASS	.	GT	0	.