Mercurial > repos > iuc > bcftools_filter

view test-data/vcf2sex.vcf @ 1:108d9789efbc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit a9550d87541eda8b909e6aef1ad8cbf9e9e20d06
author iuc
date Wed, 13 Jul 2016 10:57:03 -0400
parents 061729be105d
children
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##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=X,assembly=b37,length=249250621>
##contig=<ID=Y,assembly=b37,length=249250621>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	MALE	FEMALE
X	1	.	C	A	.	PASS	.	GT	1	0/1
X	12000	.	C	A	.	PASS	.	GT	0	0/1
X	24000	.	C	A	.	PASS	.	GT	1	0/1
X	36000	.	C	A	.	PASS	.	GT	0	0/1
X	48000	.	C	A	.	PASS	.	GT	1	0/1
X	60000	.	C	A	.	PASS	.	GT	0	0/1
X	100000	.	C	A	.	PASS	.	GT	0/1	0/1
X	2699521	.	C	A	.	PASS	.	GT	0	0/1
X	33145825	.	C	A	.	PASS	.	GT	1	0/1
X	63592129	.	C	A	.	PASS	.	GT	1	0/1
X	94038433	.	C	A	.	PASS	.	GT	0	0/1
X	124484737	.	C	A	.	PASS	.	GT	0	0/1
X	154931043	.	C	A	.	PASS	.	GT	0/1	0/1
Y	1	.	C	A	.	PASS	.	GT	0	.
Y	11874713	.	C	A	.	PASS	.	GT	0	.
Y	23749426	.	C	A	.	PASS	.	GT	0	.
Y	35624139	.	C	A	.	PASS	.	GT	0	.
Y	47498852	.	C	A	.	PASS	.	GT	0	.
Y	59373565	.	C	A	.	PASS	.	GT	0	.