# HG changeset patch # User iuc # Date 1468421823 14400 # Node ID 108d9789efbcf80a16d9023963161fc2c2e1ebd2 # Parent 061729be105d4457a88a82ca0dc7116af5076a4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit a9550d87541eda8b909e6aef1ad8cbf9e9e20d06 diff -r 061729be105d -r 108d9789efbc macros.xml --- a/macros.xml Wed Jul 06 07:03:12 2016 -0400 +++ b/macros.xml Wed Jul 13 10:57:03 2016 -0400 @@ -77,7 +77,6 @@ #set $vcfs_list_file = 'vcfs_list' #for (i,input_file) in enumerate($input_files): #set $input_vcf = 'input' + str($i) + '.vcf.gz' - echo '$input_vcf' >> $vcfs_list_file && #if $input_file.datatype.file_ext == 'vcf' bgzip -c "$input_file" > $input_vcf && bcftools index $input_vcf && @@ -95,6 +94,7 @@ #elif $input_file.datatype.file_ext == 'bcfvcf_bgz' ln -s "$input_file" $input_vcf && #end if + echo '$input_vcf' >> $vcfs_list_file && $input_vcfs.append($input_vcf) #end for ]]>