comparison bcftools_gtcheck.xml @ 8:833ad3665419 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5

7:a1213a0b7b66

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
    <description>Check sample identity</description>
    <macros>
        <token name="@EXECUTABLE@">gtcheck</token>
        <import>macros.xml</import>
    </macros>

]]>
    </command>
    <inputs>
        <expand macro="macro_input" />
        <section name="sec_restrict" expanded="false" title="Restrict to">
            <expand macro="macro_regions" />
            <expand macro="macro_targets" />
        </section>
        <section name="sec_default" expanded="true" title="Default Options">
            <param name="genotypes" type="data" format="vcf,bcf" label="Genotypes to compare against" optional="True"
                   help="(-g) Checks sample identity or wehn omitted a multi-sample cross-check is performed"/>
            <param name="target_sample" type="text" label="Target Sample" optional="True" help="Target sample in the -g file (used only for plotting)" />

8:833ad3665419

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1">
    <description>Check sample identity</description>
    <macros>
        <token name="@EXECUTABLE@">gtcheck</token>
        <import>macros.xml</import>
    </macros>

]]>
    </command>
    <inputs>
        <expand macro="macro_input" />
        <section name="sec_restrict" expanded="false" title="Restrict to">
            <expand macro="macro_restrict" />
            <expand macro="macro_restrict" type="target" label_type="Target" />
        </section>
        <section name="sec_default" expanded="true" title="Default Options">
            <param name="genotypes" type="data" format="vcf,bcf" label="Genotypes to compare against" optional="True"
                   help="(-g) Checks sample identity or wehn omitted a multi-sample cross-check is performed"/>
            <param name="target_sample" type="text" label="Target Sample" optional="True" help="Target sample in the -g file (used only for plotting)" />