# HG changeset patch
# User iuc
# Date 1723412757 0
# Node ID bf533509c5b6917148d5a74c95c804b9f03c4e7c
# Parent  56556e1267de8cdc0b65199ed9fc3ee65573e50e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 5b9441b69b3c176ab7b89609495f66cb29d1091a

diff -r 56556e1267de -r bf533509c5b6 bcftools_mpileup.xml
--- a/bcftools_mpileup.xml	Tue Jul 16 17:02:40 2024 +0000
+++ b/bcftools_mpileup.xml	Sun Aug 11 21:45:57 2024 +0000
@@ -1,5 +1,4 @@
-<?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy4" profile="@PROFILE@">
     <description>Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files</description>
     <macros>
         <token name="@EXECUTABLE@">mpileup</token>
@@ -93,7 +92,7 @@
     -F "${section.perform_indel_calling.minimum_gapped_read_fraction}"
     ${section.perform_indel_calling.gapped_read_per_sample}
     #if len( $section.perform_indel_calling.platform_list_repeat ):
-        -P "${ ",".join( [ str( platform.platform_entry ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }"
+        -P "${ ",".join( [ str( platform['platform_entry'] ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }"
     #end if
 #end if