Mercurial > repos > iuc > bcftools_mpileup
changeset 12:31ea13dfe5e6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 407e1d8f4dd1a60623783331926098f7f5624841
| author | iuc |
|---|---|
| date | Fri, 19 Aug 2022 19:51:22 +0000 |
| parents | f506df85c652 |
| children | 37757ffb4c5f |
| files | bcftools_mpileup.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/bcftools_mpileup.xml Sat Jul 23 13:40:56 2022 +0000 +++ b/bcftools_mpileup.xml Fri Aug 19 19:51:22 2022 +0000 @@ -1,5 +1,5 @@ <?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy2"> <description>Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files</description> <macros> <token name="@EXECUTABLE@">mpileup</token> @@ -108,6 +108,7 @@ #end if #end if -d "${section.max_reads_per_bam}" +$section.ignore_overlaps ${section.skip_anomalous_read_pairs} #if str( $section.quality.quality_settings ) == "adjust": $section.quality.baq