Mercurial > repos > iuc > bcftools_norm

diff bcftools_norm.xml @ 5:e49eeb4059e0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:42:48 -0400
parents 660f8eec689d
children 19905c025d2a
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--- a/bcftools_norm.xml	Sat Mar 11 18:00:25 2017 -0500
+++ b/bcftools_norm.xml	Thu Apr 13 17:42:48 2017 -0400
@@ -6,7 +6,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="1.3.1">samtools</requirement>
+        <expand macro="samtools_requirement"/>
     </expand>
     <expand macro="version_command" />
     <command detect_errors="aggressive"><![CDATA[
@@ -16,6 +16,7 @@
 @PREPARE_FASTA_REF@
 #set $section = $sec_restrict
 @PREPARE_TARGETS_FILE@
+@PREPARE_REGIONS_FILE@
 
 bcftools @EXECUTABLE@
 
@@ -52,7 +53,7 @@
 
 ## Primary Input/Outputs
 @INPUT_FILE@
-> "$output_file"
+> '$output_file'
 ]]>
     </command>
     <inputs>