Mercurial > repos > iuc > bcftools_plugin_counts

view test-data/annotate2.vcf @ 19:c450406f722b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit cdb4558db96dd58f9f85267488a1e27ad813fca4
author iuc
date Thu, 29 Sep 2022 09:06:21 +0000
parents 06cd2a0252dc
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##fileformat=VCFv4.1
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
##FILTER=<ID=q11,Description="Quality below 10">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B	C
1	3000001	xx	C	T	11	PASS	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	0/0:11:1.1:xxx	0/0:11:1.1:x	0/0:11:1.1:x
1	3000002	.	C	T	.	.	.	GT	.	.	.
1	3000003	xx	C	T	11	q11	FLAG;IINT=.;IFLT=.;ISTR=.	GT:FINT:FFLT:FSTR	0/0:.:.:.	0/0:.:.:.	0/0:.:.:.
1	3000004	xx	C	T	11	q11	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	0/0:11:1.1:x	0/0:11:1.1:xxx	0/0:11:1.1:xxx