Mercurial > repos > iuc > bcftools_plugin_fill_tags

diff bcftools_plugin_fill_tags.xml @ 5:d87ee398707f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:45:17 -0400
parents b365f9164cdf
children e493702b19eb
line wrap: on
line diff
--- a/bcftools_plugin_fill_tags.xml	Sat Mar 11 18:01:29 2017 -0500
+++ b/bcftools_plugin_fill_tags.xml	Thu Apr 13 17:45:17 2017 -0400
@@ -13,6 +13,7 @@
 @PREPARE_INPUT_FILE@
 #set $section = $sec_restrict
 @PREPARE_TARGETS_FILE@
+@PREPARE_REGIONS_FILE@
 
 bcftools plugin @EXECUTABLE@
 
@@ -32,8 +33,9 @@
 #set $section = $sec_plugin
 #if $section.tags:
 -- --tags "${section.tags}"
+@SAMPLES@
 #end if
-> "$output_file"
+> '$output_file'
 ]]>
     </command>
     <inputs>
@@ -52,7 +54,9 @@
                 <option value="AC_Hom">AC_Hom</option>
                 <option value="AC_Het">AC_Het</option>
                 <option value="AC_Hemi">AC_Hemi</option>
+                <option value="HWE">HWE</option>
             </param>
+            <expand macro="macro_samples" />
         </section>
         <expand macro="macro_select_output_type" />
     </inputs>
@@ -85,7 +89,6 @@
                 </assert_contents>
             </output>
         </test>
-
     </tests>
 
     <help><![CDATA[