Mercurial > repos > iuc > bcftools_plugin_fixploidy

view test-data/consensus.vcf @ 4:b7dc6f8084ce draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 3edcac645f34d5a94884dedaf95c5774f4afc5c7
author iuc
date Sat, 11 Mar 2017 18:01:42 -0500
parents 7d6599c7e2fb
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##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##ALT=<ID=DEL,Description="Deletion">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA001
1	5	.	C	a	.	PASS	.	GT	0/1
1	5	.	C	t	.	PASS	.	GT	0/1
1	7	.	T	a	.	PASS	.	GT	.
1	10	.	G	a	.	PASS	.	GT	0/1
1	12	.	GACA	ga	.	PASS	.	GT	0/1
1	16	.	T	taaa	.	PASS	.	GT	1/1
1	19	.	A	c	.	PASS	.	GT	0/1
1	61	.	C	a	.	PASS	.	GT	0/1
2	61	.	AGAG	aa	.	PASS	.	GT	0/1
2	119	.	AAA	t	.	PASS	.	GT	0/1
2	179	.	G	gacgtacgt	.	PASS	.	GT	0/1
2	200	.	A	<DEL>	.	PASS	END=210	GT	1/0
2	481	.	T	c,a	.	PASS	.	GT	0/2