Mercurial > repos > iuc > bcftools_plugin_impute_info

annotate test-data/convert.vcf @ 10:0c1889b0917b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
author iuc
date Thu, 17 Oct 2019 02:48:18 -0400
parents 981086ab0e3d
children
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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1 ##fileformat=VCFv4.1
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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2 ##FILTER=<ID=PASS,Description="All filters passed">
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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4 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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5 ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability">
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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6 ##contig=<ID=X,assembly=b37,length=155270560>
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7 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 NA00004 NA00005 NA00006 NA00007 NA00008 NA00009 NA00010
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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37 X 2699775 . C A 71.1 . . GT:PL:GP 0:0,62:1,0 0:0,101:1,0 0:0,130:1,0 0:0,141:1,0 0:0,54:1,0 0|0:0,30,203:1,0,0 0|0:0,39,208:1,0,0 0|0:0,30,177:1,0,0 0|0:0,18,132:1,0,0 0|0:0,15,103:1,0,0
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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38 X 2699898 . C CT 999 . . GT:PL:GP 0:0,32:1,0 0:0,11:1,0 1:11,0:0,1 0:0,11:1,0 1:31,0:0,1 1|0:11,0,24:0.0438,0.9562,0 1|0:8,0,17:0,1,0 0|0:0,33,72:1,0,0 0|0:0,27,69:1,0,0 0|1:11,4,12:0.0003,0.9997,0
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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39 X 2699968 . A G 999 . . GT:PL:GP .:0,84:1,0 0:0,32:1,0 0:0,57:1,0 1:131,0:0,1 0:0,66:1,0 0|1:89,0,44:0,1,0 0|0:0,18,157:1,0,0 0|0:0,45,255:1,0,0 0|1:75,0,109:0,1,0 1|0:98,0,62:0,1,0
981086ab0e3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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40 X 2699970 . T C 55.3 . . GT:PL:GP 0:0,68:1,0 0:0,34:1,0 0:0,32:1,0 0:0,162:1,0 0:0,63:1,0 0|0:0,15,149:1,0,0 0|0:0,21,181:1,0,0 0|0:0,45,255:1,0,0 0|0:0,27,207:1,0,0 0|0:0,24,196:1,0,0