Mercurial > repos > iuc > bcftools_plugin_missing2ref
view test-data/concat.1.a.vcf @ 17:6ce175385dd9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 087a38fc2eade9f3a286d672ba61571b0b69a797
author | iuc |
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date | Mon, 26 Sep 2022 18:13:10 +0000 |
parents | 5e9cf5308e97 |
children |
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##fileformat=VCFv4.0 ##FILTER=<ID=Fail,Description="Test"> ##FILTER=<ID=q10,Description="Quality below 10"> ##INFO=<ID=XX,Number=1,Type=Integer,Description="Test"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##contig=<ID=2,length=62435964> ##contig=<ID=1,length=62435964> ##samtoolsVersion=0.2.0-rc10+htslib-0.2.0-rc10 ##samtoolsCommand=samtools mpileup -t INFO/DPR -C50 -pm3 -F0.2 -d10000 -ug -r 1:1-1000000 -b mpileup.2014-07-03//lists/chr1-pooled.list -f human_g1k_v37.fasta ##ALT=<ID=X,Description="Represents allele(s) other than observed."> ##bcftools_callVersion=0.2.0-rc10-2-gcd94fde+htslib-0.2.0-rc10 ##bcftools_callCommand=call -vm -f GQ -S mpileup.2014-07-03//pooled/1/1:1-1000000.samples - #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A 1 100 . GTTT G 1806 q10 XX=11;DP=35 GT:GQ:DP 0/1:409:35 1 110 . C T,G 1792 Fail DP=32 GT:GQ:DP 0/1:245:32 1 110 . CAAA C 1792 Fail DP=32 GT:GQ:DP 0/1:245:32 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 1 130 . G T 1016 Fail DP=22 GT:GQ:DP 0/1:212:22 1 130 . GAA GG 1016 Fail DP=22 GT:GQ:DP 0/1:212:22 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 1 150 . TAAAA TA,T 246 Fail DP=10 GT:GQ:DP 1/2:12:10 1 160 . TAAAA TA,T 246 Fail DP=10 GT:GQ:DP 1/2:12:10 2 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35 2 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32 2 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 2 130 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 2 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 2 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10