Mercurial > repos > iuc > bcftools_plugin_setgt
comparison bcftools_plugin_setgt.xml @ 5:39d2fa47f557 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
| author | iuc |
|---|---|
| date | Thu, 13 Apr 2017 17:47:33 -0400 |
| parents | 03e354151925 |
| children | 09f5e45a8212 |
comparison
equal
deleted
inserted
replaced
| 4:03e354151925 | 5:39d2fa47f557 |
|---|---|
| 11 <command detect_errors="aggressive"><![CDATA[ | 11 <command detect_errors="aggressive"><![CDATA[ |
| 12 @PREPARE_ENV@ | 12 @PREPARE_ENV@ |
| 13 @PREPARE_INPUT_FILE@ | 13 @PREPARE_INPUT_FILE@ |
| 14 #set $section = $sec_restrict | 14 #set $section = $sec_restrict |
| 15 @PREPARE_TARGETS_FILE@ | 15 @PREPARE_TARGETS_FILE@ |
| 16 @PREPARE_REGIONS_FILE@ | |
| 16 bcftools plugin @EXECUTABLE@ | 17 bcftools plugin @EXECUTABLE@ |
| 17 | 18 |
| 18 ## VCF input section | 19 ## VCF input section |
| 19 #set $section = $sec_restrict | 20 #set $section = $sec_restrict |
| 20 @INCLUDE@ | 21 @INCLUDE@ |
| 31 ## Plugin section | 32 ## Plugin section |
| 32 #set $section = $sec_plugin | 33 #set $section = $sec_plugin |
| 33 -- | 34 -- |
| 34 -t '$section.target_gt' | 35 -t '$section.target_gt' |
| 35 --new-gt '$section.new_gt' | 36 --new-gt '$section.new_gt' |
| 36 > "$output_file" | 37 > '$output_file' |
| 37 ]]> | 38 ]]> |
| 38 </command> | 39 </command> |
| 39 <inputs> | 40 <inputs> |
| 40 <expand macro="macro_input" /> | 41 <expand macro="macro_input" /> |
| 41 <section name="sec_restrict" expanded="false" title="Restrict to"> | 42 <section name="sec_restrict" expanded="false" title="Restrict to"> |