Mercurial > repos > iuc > bcftools_plugin_setgt

view test-data/concat.2.a.vcf @ 14:99238dfb46cb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
author iuc
date Sat, 15 Jan 2022 13:26:40 +0000
parents 7e1a7520e05f
children
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##fileformat=VCFv4.0
##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FILTER=<ID=Fail,Description="Fail">
##contig=<ID=1,length=62435964>
##contig=<ID=2,length=62435964>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
2	140	.	A	G	727	PASS	DP=30	GT:GQ:DP	0/1:150:30
2	160	.	TAAAA	TA,TC,T	246	PASS	DP=10	GT:GQ:DP	0/2:12:10
1	110	.	C	T,G	1792	Fail	XX=11;DP=32	GT:GQ:DP	0/1:245:32
1	130	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22
1	130	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22