changeset 17:a1aad8b559c6 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 087a38fc2eade9f3a286d672ba61571b0b69a797

--- a/bcftools_plugin_setgt.xml	Tue Sep 20 13:03:05 2022 +0000
+++ b/bcftools_plugin_setgt.xml	Mon Sep 26 18:07:19 2022 +0000
@@ -19,8 +19,6 @@
 
 ## VCF input section
 #set $section = $sec_restrict
-@INCLUDE@
-@EXCLUDE@
 @REGIONS@
 @TARGETS@
 
@@ -35,6 +33,10 @@
 --
 --target-gt '$section.target_gt'
 --new-gt '$section.new_gt'
+
+#set $section = $sec_restrict
+@INCLUDE@
+@EXCLUDE@
 > '$output_file'
 ]]>
     </command>
@@ -82,6 +84,23 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <param name="input_file" ftype="vcf" value="plugin1.vcf" />
+            <section name="sec_restrict">
+                <param name="exclude" value="FMT/GQ>20"/>
+            </section>
+            <section name="sec_plugin">
+                <param name="target_gt" value="q" />
+                <param name="new_gt" value="." />
+            </section>
+            <param name="output_type" value="v" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="DP4=1,2,3,4;INDEL;STR=test" />
+                    <has_n_lines n="38"/>
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help><![CDATA[
 =====================================

--- a/macros.xml	Tue Sep 20 13:03:05 2022 +0000
+++ b/macros.xml	Mon Sep 26 18:07:19 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
   <token name="@TOOL_VERSION@">1.15.1</token>
-  <token name="@VERSION_SUFFIX@">0</token>
+  <token name="@VERSION_SUFFIX@">1</token>
   <token name="@PROFILE@">20.01</token>
   <xml name="bio_tools">
       <xrefs>