Mercurial > repos > iuc > bcftools_query_list_samples
comparison bcftools_query_list_samples.xml @ 0:1af52ffc90e3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author | iuc |
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date | Wed, 06 Jul 2016 07:08:29 -0400 |
parents | |
children | 5272100dd270 |
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-1:000000000000 | 0:1af52ffc90e3 |
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1 <?xml version='1.0' encoding='utf-8'?> | |
2 <tool name="bcftools List Samples" id="bcftools_@EXECUTABLE@_list_samples" version="@VERSION@.0"> | |
3 <description>in VCF/BCF file</description> | |
4 <macros> | |
5 <token name="@EXECUTABLE@">query</token> | |
6 <import>macros.xml</import> | |
7 </macros> | |
8 <expand macro="requirements" /> | |
9 <expand macro="version_command" /> | |
10 <command detect_errors="aggressive"><![CDATA[ | |
11 @PREPARE_ENV@ | |
12 @PREPARE_INPUT_FILE@ | |
13 bcftools @EXECUTABLE@ --list-samples | |
14 ## Primary Input/Outputs | |
15 @INPUT_FILE@ | |
16 | tee $output_file | tr '\n' ',' | |
17 ]]> | |
18 </command> | |
19 <inputs> | |
20 <expand macro="macro_input" /> | |
21 </inputs> | |
22 <outputs> | |
23 <data name="output_file" format="tabular"/> | |
24 </outputs> | |
25 <tests> | |
26 <test> | |
27 <param name="input_file" ftype="vcf" value="query.vcf" /> | |
28 <output name="output_file"> | |
29 <assert_contents> | |
30 <has_text text="C" /> | |
31 <not_has_text text="A" /> | |
32 </assert_contents> | |
33 </output> | |
34 </test> | |
35 </tests> | |
36 <help><![CDATA[ | |
37 ===================================== | |
38 bcftools List Samples @EXECUTABLE@ | |
39 ===================================== | |
40 | |
41 Lists Samples from a VCF/BCF file | |
42 | |
43 @BCFTOOLS_MANPAGE@#@EXECUTABLE@ | |
44 | |
45 @BCFTOOLS_WIKI@ | |
46 ]]> | |
47 </help> | |
48 <expand macro="citations" /> | |
49 </tool> |