diff test-data/concat.3.a.vcf @ 0:6ca0d413a76a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:08:44 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/concat.3.a.vcf	Wed Jul 06 07:08:44 2016 -0400
@@ -0,0 +1,27 @@
+##fileformat=VCFv4.0
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FILTER=<ID=q10,Description="Quality below 10">
+##contig=<ID=9,length=62435964>
+##contig=<ID=1,length=62435964>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B
+9	202	.	GTTT	G	1806	q10	DP=35	GT:GQ:DP	0|1:409:35	0|1
+9	212	.	C	T,G	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
+9	212	.	CAAA	C	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
+9	222	.	GA	G	628	q10	DP=21	GT:GQ:DP	0|1:21:21	0|1
+9	232	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
+9	232	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
+9	242	.	GT	G	727	PASS	DP=30	GT:GQ:DP	0|1:150:30	0|1
+9	252	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
+9	262	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
+1	100	.	GTTT	G	1806	q10	DP=35	GT:GQ:DP	0|1:409:35	0|1
+1	110	.	C	T,G	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
+1	110	.	CAAA	C	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
+1	120	.	GA	G	628	q10	DP=21	GT:GQ:DP	0|1:21:21	0|1
+1	130	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
+1	130	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
+1	140	.	GT	G	727	PASS	DP=30	GT:GQ:DP	0|1:150:30	0|1
+1	150	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
+1	160	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1