Mercurial > repos > iuc > bcftools_stats

annotate test-data/concat.2.a.vcf @ 22:591cc8518033 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 784611c9caf2680d41414ca2880b93a69d719701
author iuc
date Sun, 18 Aug 2024 10:16:43 +0000
parents 92e47ae9a121
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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1 ##fileformat=VCFv4.0
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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2 ##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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7 ##FILTER=<ID=Fail,Description="Fail">
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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8 ##contig=<ID=1,length=62435964>
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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9 ##contig=<ID=2,length=62435964>
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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11 2 140 . A G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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12 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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13 1 110 . C T,G 1792 Fail XX=11;DP=32 GT:GQ:DP 0/1:245:32
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
92e47ae9a121 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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15 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22